4X0Z
JC Polyomavirus genotype 3 VP1 in complex with GM1 oligosaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E | Major capsid protein | polymer | 272 | 30033.8 | 5 | UniProt (P90498) Pfam (PF00718) In PDB | JC polyomavirus type 3 (JCPyV) | VP1,VP1 capsid protein |
| 2 | F, G | beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose | branched | 836.7 | 2 | In PDB GlyTouCan (G50886AE) | |||
| 3 | H | beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 998.9 | 1 | In PDB GlyTouCan (G48558GR) | |||
| 4 | C, A, D, B, E | GLYCEROL | non-polymer | 92.1 | 22 | Chemie (GOL) | |||
| 5 | C, A, D, B, E | 1,2-ETHANEDIOL | non-polymer | 62.1 | 13 | Chemie (EDO) | |||
| 6 | B, E, C, A, D | POTASSIUM ION | non-polymer | 39.1 | 10 | Chemie (K) | |||
| 7 | water | water | 18.0 | 1284 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 22 - 289 (UniProt: P90498)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
| Ser 19 | - | expression tag |
| His 20 | - | expression tag |
| Met 21 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 150169.0 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 2672.4 | |
| Non-Polymers* | Number of molecules | 45 |
| Total formula weight | 3223.9 | |
| All* | Total formula weight | 156065.3 |
