4WRO
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, JB (13, 1G) | 16S ribosomal RNA | polymer | 1522 | 493958.3 | 2 | GenBank (155076) | Thermus thermophilus HB8 | |
| 2 | B, CA, D (1L, 3L, 3K) | tRNA-Phe | polymer | 76 | 24635.9 | 3 | Escherichia coli K-12 | ||
| 3 | BA, C (2L, 2K) | tRNA-fMet | polymer | 77 | 24850.0 | 2 | Escherichia coli K-12 | ||
| 4 | DA, E (4L, 4K) | RNA (30-MER) | polymer | 30 | 9802.0 | 2 | Thermus thermophilus HB8 | ||
| 5 | EA, F (14, 1H) | 23S ribosomal RNA | polymer | 2917 | 948539.9 | 2 | GenBank (48268) | Thermus thermophilus HB8 | |
| 6 | G, KB (1E, 12) | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 2 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus HB8 | |
| 7 | H, LB (2E, 22) | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 2 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus HB8 | |
| 8 | I, MB (3E, 32) | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 2 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus HB8 | |
| 9 | J (4E) | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus HB8 | |
| 10 | K (5E) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus HB8 | TS9 |
| 11 | L (6E) | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus HB8 | |
| 12 | M (7E) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus HB8 | |
| 13 | N (8E) | 30S ribosomal protein S9 | polymer | 128 | 14410.6 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus HB8 | |
| 14 | O (1I) | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus HB8 | |
| 15 | P (2I) | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus HB8 | |
| 16 | Q (3I) | 30S ribosomal protein S12 | polymer | 132 | 14637.4 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus HB8 | |
| 17 | R (4I) | 30S ribosomal protein S13 | polymer | 126 | 14352.9 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus HB8 | |
| 18 | S (5I) | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus HB8 | |
| 19 | T (6I) | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus HB8 | |
| 20 | U (7I) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus HB8 | |
| 21 | V (8I) | 30S ribosomal protein S17 | polymer | 105 | 12325.7 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus HB8 | |
| 22 | W (9I) | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus HB8 | |
| 23 | X (AI) | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus HB8 | |
| 24 | Y (BI) | 30S ribosomal protein S20 | polymer | 106 | 11736.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus HB8 | |
| 25 | Z (1F) | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus HB8 | S31 |
| 26 | AA (1K) | tRNA-Phe | polymer | 76 | 24633.9 | 1 | Escherichia coli K-12 | ||
| 27 | FA, GA (1J, 16) | 5S ribosomal RNA | polymer | 122 | 39540.6 | 2 | GenBank (55771382) | Thermus thermophilus HB8 | |
| 28 | HA (11) | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 1 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus HB8 | |
| 29 | IA (21) | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 1 | UniProt (Q5SHN8) Pfam (PF00297) | Thermus thermophilus HB8 | |
| 30 | JA (31) | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 1 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus HB8 | L1e |
| 31 | KA (41) | 50S ribosomal protein L5 | polymer | 182 | 21061.6 | 1 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus HB8 | |
| 32 | LA (51) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 1 | UniProt (Q5SHQ3) Pfam (PF00347) UniProt (by SIFTS) (P0DOY8) | Thermus thermophilus HB8 | |
| 33 | MA (61) | 50S ribosomal protein L9 | polymer | 148 | 16422.2 | 1 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus HB8 | |
| 34 | NA (58) | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 1 | UniProt (P60488) Pfam (PF00572) | Thermus thermophilus HB8 | |
| 35 | OA (68) | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 1 | UniProt (Q5SHP8) Pfam (PF00238) | Thermus thermophilus HB8 | |
| 36 | PA (78) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 1 | UniProt (Q5SHQ7) Pfam (PF00828) | Thermus thermophilus HB8 | |
| 37 | QA (88) | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 1 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus HB8 | |
| 38 | RA (98) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 1 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus HB8 | |
| 39 | SA (A8) | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 1 | UniProt (Q5SHQ4) Pfam (PF00861) | Thermus thermophilus HB8 | TL24 |
| 40 | TA (B8) | 50S ribosomal protein L19 | polymer | 146 | 17188.8 | 1 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus HB8 | |
| 41 | UA (C8) | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 1 | UniProt (P60491) Pfam (PF00453) | Thermus thermophilus HB8 | |
| 42 | VA (D8) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 1 | UniProt (P60492) Pfam (PF00829) | Thermus thermophilus HB8 | |
| 43 | WA (E8) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 1 | UniProt (Q5SHP3) Pfam (PF00237) | Thermus thermophilus HB8 | |
| 44 | XA (F8) | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 1 | UniProt (Q5SHP0) Pfam (PF00276) | Thermus thermophilus HB8 | |
| 45 | YA (G8) | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 1 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus HB8 | |
| 46 | ZA (H8) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 1 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus HB8 | TL5 |
| 47 | AB (I8) | 50S ribosomal protein L27 | polymer | 85 | 9557.1 | 1 | UniProt (P60493) Pfam (PF01016) | Thermus thermophilus HB8 | |
| 48 | BB (J8) | 50S ribosomal protein L28 | polymer | 98 | 11004.2 | 1 | UniProt (P60494) Pfam (PF00830) | Thermus thermophilus HB8 | |
| 49 | CB (K8) | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 1 | UniProt (Q5SHP6) Pfam (PF00831) | Thermus thermophilus HB8 | |
| 50 | DB (L8) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 1 | UniProt (Q5SHQ6) Pfam (PF00327) | Thermus thermophilus HB8 | |
| 51 | EB (M8) | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 1 | UniProt (Q5SJE1) Pfam (PF01197) | Thermus thermophilus HB8 | |
| 52 | FB (N8) | 50S ribosomal protein L32 | polymer | 60 | 6722.1 | 1 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus HB8 | |
| 53 | GB (O8) | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 1 | UniProt (P35871) Pfam (PF00471) | Thermus thermophilus HB8 | |
| 54 | HB (P8) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 1 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus HB8 | |
| 55 | IB (Q8) | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 1 | UniProt (Q5SKU1) Pfam (PF01632) | Thermus thermophilus HB8 | |
| 56 | AAA, ABA, AC, ACA, AD... (1H, 13, 14, 41, 1G...) | MAGNESIUM ION | non-polymer | 24.3 | 1259 | Chemie (MG) | |||
| 57 | AY, CYA, DYA, FUA, TX... (5I, 1G, 32, G8, 14...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
| 58 | AZA, BZA, CZA, DZA, EYA... (31, 58, 78, 98, 13...) | water | water | 18.0 | 2532 | Chemie (HOH) |
Sequence modifications
13, 1G: 0 - 1544 (GenBank: 155076)
14, 1H: 1 - 2907 (GenBank: 48268)
4I: 1 - 126 (UniProt: P80377)
I8: 1 - 85 (UniProt: P60493)
14, 1H: 1 - 2907 (GenBank: 48268)
| PDB | External Database | Details |
|---|---|---|
| U 161 | - | insertion |
| G 493 | - | insertion |
| G 1228 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Ala 119 | Gly 119 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 6 | Gly 6 | conflict |
| Ala 8 | Gly 8 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 65 |
| Total formula weight | 3895331.6 | |
| Non-Polymers* | Number of molecules | 1265 |
| Total formula weight | 30992.4 | |
| All* | Total formula weight | 3926324.1 |
