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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4WRO

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
113, 1G16S ribosomal RNApolymer1522493958.32GenBank (155076)Thermus thermophilus HB8
21L, 3L, 3KtRNA-Phepolymer7624635.93Escherichia coli K-12
32L, 2KtRNA-fMetpolymer7724850.02Escherichia coli K-12
44L, 4KRNA (30-MER)polymer309802.02Thermus thermophilus HB8
514, 1H23S ribosomal RNApolymer2917948539.92GenBank (48268)Thermus thermophilus HB8
61E, 1230S ribosomal protein S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus HB8
72E, 2230S ribosomal protein S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus HB8
83E, 3230S ribosomal protein S4polymer20924373.42UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus HB8
94E30S ribosomal protein S5polymer16217583.41UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus HB8
105E30S ribosomal protein S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus HB8TS9
116E30S ribosomal protein S7polymer15618051.01UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus HB8
127E30S ribosomal protein S8polymer13815868.61UniProt (Q5SHQ2)
In PDB		Thermus thermophilus HB8
138E30S ribosomal protein S9polymer12814410.61UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus HB8
141I30S ribosomal protein S10polymer10511955.01UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus HB8
152I30S ribosomal protein S11polymer12913737.91UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus HB8
163I30S ribosomal protein S12polymer13214637.41UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus HB8
174I30S ribosomal protein S13polymer12614352.91UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus HB8
185I30S ribosomal protein S14 type Zpolymer617158.71UniProt (Q5SHQ1)
In PDB		Thermus thermophilus HB8
196I30S ribosomal protein S15polymer8910578.41UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus HB8
207I30S ribosomal protein S16polymer8810410.01UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus HB8
218I30S ribosomal protein S17polymer10512325.71UniProt (Q5SHP7)
In PDB		Thermus thermophilus HB8
229I30S ribosomal protein S18polymer8810258.31UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus HB8
23AI30S ribosomal protein S19polymer9310605.51UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus HB8
24BI30S ribosomal protein S20polymer10611736.11UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus HB8
251F30S ribosomal protein Thxpolymer273350.01UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus HB8S31
261KtRNA-Phepolymer7624633.91Escherichia coli K-12
271J, 165S ribosomal RNApolymer12239540.62GenBank (55771382)Thermus thermophilus HB8
281150S ribosomal protein L2polymer27630532.61UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus HB8
292150S ribosomal protein L3polymer20622450.21UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus HB8
303150S ribosomal protein L4polymer21023271.91UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus HB8L1e
314150S ribosomal protein L5polymer18221061.61UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus HB8
325150S ribosomal protein L6polymer18019568.91UniProt (Q5SHQ3)
In PDB		Thermus thermophilus HB8
336150S ribosomal protein L9polymer14816422.21UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus HB8
345850S ribosomal protein L13polymer14015927.91UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus HB8
356850S ribosomal protein L14polymer12213323.61UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus HB8
367850S ribosomal protein L15polymer15016319.11UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus HB8
378850S ribosomal protein L16polymer14115993.91UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus HB8
389850S ribosomal protein L17polymer11813750.11UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus HB8
39A850S ribosomal protein L18polymer11212639.81UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilus HB8TL24
40B850S ribosomal protein L19polymer14617188.81UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus HB8
41C850S ribosomal protein L20polymer11813779.31UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus HB8
42D850S ribosomal protein L21polymer10111069.21UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus HB8
43E850S ribosomal protein L22polymer11312808.11UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus HB8
44F850S ribosomal protein L23polymer9610759.81UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus HB8
45G850S ribosomal protein L24polymer11012085.61UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus HB8
46H850S ribosomal protein L25polymer20623238.61UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus HB8TL5
47I850S ribosomal protein L27polymer859557.11UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus HB8
48J850S ribosomal protein L28polymer9811004.21UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus HB8
49K850S ribosomal protein L29polymer728670.31UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus HB8
50L850S ribosomal protein L30polymer606799.11UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus HB8
51M850S ribosomal protein L31polymer718300.51UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus HB8
52N850S ribosomal protein L32polymer606722.11UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus HB8
53O850S ribosomal protein L33polymer546632.91UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus HB8
54P850S ribosomal protein L34polymer496132.41UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus HB8
55Q850S ribosomal protein L35polymer657506.21UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus HB8
561H, 13, 14, 41, 1G...MAGNESIUM IONnon-polymer24.31259Chemie (MG)
575I, 1G, 32, G8, 14...ZINC IONnon-polymer65.46Chemie (ZN)
58waterwater18.02532Chemie (HOH)
Sequence modifications
13, 1G: 0 - 1544 (GenBank: 155076)
14, 1H: 1 - 2907 (GenBank: 48268)
PDBExternal DatabaseDetails
U 161-insertion
G 493-insertion
G 1228-insertion
4I: 1 - 126 (UniProt: P80377)
PDBExternal DatabaseDetails
Ala 119Gly 119conflict
I8: 1 - 85 (UniProt: P60493)
PDBExternal DatabaseDetails
Ala 6Gly 6conflict
Ala 8Gly 8conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains65
Total formula weight3895331.6
Non-Polymers*Number of molecules1265
Total formula weight30992.4
All*Total formula weight3926324.1
*Water molecules are not included.

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PDB entries from 2024-06-12

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