4WJK
Metal Ion and Ligand Binding of Integrin
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Integrin alpha-5 | polymer | 452 | 48116.9 | 1 | UniProt (P08648) Pfam (PF01839) In PDB | Homo sapiens (Human) | CD49 antigen-like family member E,Fibronectin receptor subunit alpha,Integrin alpha-F,VLA-5 |
2 | B | Integrin beta-1 | polymer | 445 | 49502.9 | 1 | UniProt (P05556) Pfam (PF17205) Pfam (PF00362) In PDB | Homo sapiens (Human) | Fibronectin receptor subunit beta,Glycoprotein IIa,GPIIA,VLA-4 subunit beta |
3 | C | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G09724ZC) | |||
4 | D | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
5 | E | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G55220VL) | |||
6 | F, G, H | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
7 | I | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
8 | A, B | CALCIUM ION | non-polymer | 40.1 | 6 | Chemie (CA) | |||
9 | B | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
10 | B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
11 | water | water | 18.0 | 560 | Chemie (HOH) |
Sequence modifications
A: 1 - 452 (UniProt: P08648)
B: 1 - 445 (UniProt: P05556)
PDB | External Database | Details |
---|---|---|
Val 451 | Ile 492 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Thr 195 | Ser 215 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 97619.7 | |
Branched | Number of molecules | 7 |
Total formula weight | 4916.5 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 486.0 | |
All* | Total formula weight | 103022.2 |