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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V9I

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, CA16S ribosomal RNApolymer1504488391.22GenBank (55771382)Thermus thermophilus
2AB, CB30S Ribosomal protein S2polymer23426987.32UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
3AC, CC30S Ribosomal protein S3polymer20622862.42UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
4AD, CD30S Ribosomal protein S4polymer20824242.32UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
5AE, CE30S Ribosomal protein S5polymer15016331.12UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
6AF, CF30S Ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus
7AG, CG30S Ribosomal protein S7polymer15517919.82UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
8AH, CH30S Ribosomal protein S8polymer13815868.62UniProt (Q5SHQ2)
In PDB		Thermus thermophilus
9AI, CI30S Ribosomal protein S9polymer12714298.52UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
10AJ, CJ30S Ribosomal protein S10polymer9811299.22UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
11AK, CK30S Ribosomal protein S11polymer11912606.42UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
12AL, CL30S Ribosomal protein S12polymer12413804.32UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
13AM, CM30S Ribosomal protein S13polymer12414078.52UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
14AN, CN30S Ribosomal protein S14polymer607027.52UniProt (Q5SHQ1)
In PDB		Thermus thermophilus
15AO, CO30S Ribosomal protein S15polymer8810447.22UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
16AP, CP30S Ribosomal protein S16polymer839924.52UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
17AQ, CQ30S Ribosomal protein S17polymer9911722.92UniProt (Q5SHP7)
In PDB		Thermus thermophilus
18AR, CR30S Ribosomal protein S18polymer708155.82UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
19AS, CS30S Ribosomal protein S19polymer788949.42UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
20AT, CT30S Ribosomal protein S20polymer9910921.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
21AU, CU30S Ribosomal protein THXpolymer242960.52UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus
22AV, CVP-SITE tRNApolymer7724802.82GenBank (443419838)Escherichia coli
23AW, CWE-SITE tRNApolymer7624485.52GenBank (443419838)Escherichia coli
24AY, CYA-SITE tRNApolymer7524430.62GenBank (443419838)Escherichia coli
25AXmRNApolymer72245.41Synthetic construct
26BA, DA23S ribosomal RNApolymer2915947919.42GenBank (55771382)Thermus thermophilus
27BB, DB5S ribosomal RNApolymer11938553.02GenBank (55771382)Thermus thermophilus
28BC50S ribosomal protein L1polymer20617813.91Thermus thermophilus
29BD, DD50S ribosomal protein L2polymer27129828.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
30BE, DE50S ribosomal protein L3polymer20422250.02UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
31BF, DF50S ribosomal protein L4polymer20723014.72UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus
32BG, DG50S ribosomal protein L5polymer18120930.42UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
33BH, DH50S ribosomal protein L6polymer15917363.12UniProt (Q5SHQ3)
In PDB		Thermus thermophilus
34BI, DI50S ribosomal protein L9polymer14516093.92UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
35BJ, DJ50S ribosomal protein L10polymer1309258.12Thermus thermophilus
36BN, DN50S ribosomal protein L13polymer13815699.72UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
37BO, DO50S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
38BP, DP50S ribosomal protein L15polymer14615858.52UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
39BQ, DQ50S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
40BR, DR50S ribosomal protein L17polymer11713619.02UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
41BS, DS50S ribosomal protein L18polymer9810941.92UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilus
42BT, DT50S ribosomal protein L19polymer13716218.82UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
43BU, DU50S ribosomal protein L20polymer11713572.02UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
44BV, DV50S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
45BW, DW50S ribosomal protein L22polymer11312750.02UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
46BX, DX50S ribosomal protein L23polymer9210273.12UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus
47BY, DY50S ribosomal protein L24polymer10011078.52UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
48BZ, DZ50S ribosomal protein L25polymer17619892.92UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus
49B0, D050S ribosomal protein L27polymer849397.92UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
50B1, D150S ribosomal protein L28polymer9310458.42UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
51B2, D250S ribosomal protein L29polymer718539.12UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
52B3, D350S ribosomal protein L30polymer596670.02UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
53B4, D450S ribosomal protein L31polymer303278.92UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
54B5, D550S ribosomal protein L32polymer596590.92UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
55B6, D650S ribosomal protein L33polymer445473.42UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
56B7, D750S ribosomal protein L34polymer485975.32UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
57B8, D850S ribosomal protein L35polymer637245.92UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus
58B9, D950S ribosomal protein L36polymer364304.22UniProt (Q5SHR2)
Pfam (PF00444)
In PDB		Thermus thermophilus
59CXmRNApolymer41241.81Synthetic construct
60DC50S Ribosomal protein L1polymer19617103.11Thermus thermophilus
Sequence modifications
AI, CI: 2 - 128 (UniProt: P80374)
PDBExternal DatabaseDetails
Arg 58His 58CONFLICT
AY, CY: 1 - 75 (GenBank: 443419838)
PDBExternal DatabaseDetails
-C 2796112DELETION
BA, DA: 0 - 2914 (GenBank: 55771382)
PDBExternal DatabaseDetails
A 1151G 10391CONFLICT
BU, DU: 2 - 118 (UniProt: P60491)
PDBExternal DatabaseDetails
Ala 32Phe 32CONFLICT
BW, DW: 1 - 113 (UniProt: Q5SHP3)
PDBExternal DatabaseDetails
Ala 113Lys 113CONFLICT
B1, D1: 3 - 95 (UniProt: P60494)
PDBExternal DatabaseDetails
Arg 81Lys 81CONFLICT
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains116
Total formula weight4454288.2
All*Total formula weight4454288.2
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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