4V9H
Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (AA) | 16S ribosomal RNA | polymer | 1516 | 492082.3 | 1 | GenBank (55771382) | Thermus thermophilus | |
| 2 | B (AV) | PE hybrid state tRNA Phe | polymer | 76 | 24485.5 | 1 | GenBank (169887498) | Escherichia coli | |
| 3 | C (AX) | mRNA | polymer | 25 | 8157.0 | 1 | Synthetic construct | ||
| 4 | D (AJ) | 30S ribosomal protein S10 | polymer | 98 | 11299.2 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus | |
| 5 | E (AK) | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
| 6 | F (AL) | 30S ribosomal protein S12 | polymer | 124 | 13804.3 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus | |
| 7 | G (AM) | 30S ribosomal protein S13 | polymer | 124 | 14078.5 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
| 8 | H (AN) | 30S ribosomal protein S14 TYPE Z | polymer | 60 | 7027.5 | 1 | UniProt (Q5SHQ1) | Thermus thermophilus | |
| 9 | I (AO) | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus | |
| 10 | J (AP) | 30S ribosomal protein S16 | polymer | 83 | 9924.5 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus | |
| 11 | K (AQ) | 30S ribosomal protein S17 | polymer | 99 | 11722.9 | 1 | UniProt (Q5SHP7) | Thermus thermophilus | |
| 12 | L (AR) | 30S ribosomal protein S18 | polymer | 70 | 8155.8 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus | |
| 13 | M (AS) | 30S ribosomal protein S19 | polymer | 78 | 8949.4 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus | |
| 14 | N (AT) | 30S ribosomal protein S20 | polymer | 99 | 10921.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus | |
| 15 | O (AB) | 30S ribosomal protein S2 | polymer | 234 | 26987.3 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
| 16 | P (AC) | 30S ribosomal protein S3 | polymer | 206 | 22862.4 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus | |
| 17 | Q (AD) | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 18 | R (AE) | 30S ribosomal protein S5 | polymer | 150 | 16331.1 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus | |
| 19 | S (AF) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus | |
| 20 | T (AG) | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 21 | U (AH) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) | Thermus thermophilus | |
| 22 | V (AI) | 30S ribosomal protein S9 | polymer | 127 | 14298.5 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus | |
| 23 | W (AY) | Elongation factor G | polymer | 680 | 75741.7 | 1 | UniProt (Q5SHN5) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) | Thermus thermophilus | |
| 24 | X (AU) | 30S ribosomal protein THX | polymer | 24 | 2960.5 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus | |
| 25 | Y (BA) | 23S ribosomal RNA | polymer | 2915 | 947935.4 | 1 | GenBank (55771382) | Thermus thermophilus | |
| 26 | Z (BB) | 5S ribosomal RNA | polymer | 122 | 39540.6 | 1 | GenBank (55771382) | Thermus thermophilus | |
| 27 | AA (BN) | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 1 | UniProt (P60488) Pfam (PF00572) | Thermus thermophilus | |
| 28 | BA (BO) | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 1 | UniProt (Q5SHP8) Pfam (PF00238) | Thermus thermophilus | |
| 29 | CA (BP) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 1 | UniProt (Q5SHQ7) Pfam (PF00828) | Thermus thermophilus | |
| 30 | DA (BQ) | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 1 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus | |
| 31 | EA (BR) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 1 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus | |
| 32 | FA (BS) | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 1 | UniProt (Q5SHQ4) Pfam (PF00861) | Thermus thermophilus | TL24 |
| 33 | GA (BT) | 50S ribosomal protein L19 | polymer | 146 | 17188.8 | 1 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus | |
| 34 | HA (BU) | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 1 | UniProt (P60491) Pfam (PF00453) | Thermus thermophilus | |
| 35 | IA (BV) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 1 | UniProt (P60492) Pfam (PF00829) | Thermus thermophilus | |
| 36 | JA (BW) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 1 | UniProt (Q5SHP3) Pfam (PF00237) | Thermus thermophilus | |
| 37 | KA (BX) | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 1 | UniProt (Q5SHP0) Pfam (PF00276) | Thermus thermophilus | |
| 38 | LA (BY) | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 1 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus | |
| 39 | MA (BZ) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 1 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus | TL5 |
| 40 | NA (B0) | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 1 | UniProt (P60493) Pfam (PF01016) | Thermus thermophilus | |
| 41 | OA (B1) | 50S ribosomal protein L28 | polymer | 98 | 11004.2 | 1 | UniProt (P60494) Pfam (PF00830) | Thermus thermophilus | |
| 42 | PA (B2) | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 1 | UniProt (Q5SHP6) Pfam (PF00831) | Thermus thermophilus | |
| 43 | QA (BD) | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 1 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus | |
| 44 | RA (B3) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 1 | UniProt (Q5SHQ6) Pfam (PF00327) | Thermus thermophilus | |
| 45 | SA (B4) | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 1 | UniProt (Q5SJE1) Pfam (PF01197) | Thermus thermophilus | |
| 46 | TA (B5) | 50S ribosomal protein L32 | polymer | 60 | 6722.1 | 1 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus | |
| 47 | UA (B6) | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 1 | UniProt (P35871) Pfam (PF00471) | Thermus thermophilus | |
| 48 | VA (B7) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 1 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus | |
| 49 | WA (B8) | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 1 | UniProt (Q5SKU1) Pfam (PF01632) | Thermus thermophilus | |
| 50 | XA (B9) | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 1 | UniProt (Q5SHR2) Pfam (PF00444) | Thermus thermophilus | Ribosomal protein B |
| 51 | YA (BC) | 50S ribosomal protein L1 | polymer | 229 | 24872.7 | 1 | UniProt (Q5SLP7) Pfam (PF00687) | Thermus thermophilus | |
| 52 | ZA (BE) | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 1 | UniProt (Q5SHN8) Pfam (PF00297) | Thermus thermophilus | |
| 53 | AB (BF) | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 1 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus | L1e |
| 54 | BB (BG) | 50S ribosomal protein L5 | polymer | 182 | 21061.6 | 1 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus | |
| 55 | CB (BH) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 1 | UniProt (Q5SHQ3) | Thermus thermophilus | |
| 56 | DB (BK) | 50S ribosomal protein L11 | polymer | 147 | 15526.1 | 1 | UniProt (Q5SLP6) Pfam (PF03946) Pfam (PF00298) | Thermus thermophilus | |
| 57 | EB (BJ) | 50S ribosomal protein L10 | polymer | 130 | 9258.1 | 1 | Thermus thermophilus | ||
| 58 | FB (BL) | 50S ribosomal protein L12 CTD | polymer | 125 | 10656.1 | 1 | Thermus thermophilus | ||
| 59 | AC, AE, AF, AG, BC... (AA, BA, BD, B8, BE...) | MAGNESIUM ION | non-polymer | 24.3 | 138 | Chemie (MG) | |||
| 60 | AD (AY) | PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | non-polymer | 521.2 | 1 | Chemie (GCP) | |||
| 61 | PG (AY) | water | water | 18.0 | 4 | Chemie (HOH) |
Sequence modifications
AI: 2 - 128 (UniProt: P80374)
| PDB | External Database | Details |
|---|---|---|
| Arg 58 | His 58 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 58 |
| Total formula weight | 2302152.7 | |
| Non-Polymers* | Number of molecules | 139 |
| Total formula weight | 3875.3 | |
| All* | Total formula weight | 2306028.0 |
