4V9F
The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 23S Ribosomal RNA | polymer | 2910 | 942258.9 | 1 | Haloarcula marismortui | ||
| 2 | B (9) | 5S Ribosomal RNA | polymer | 122 | 39303.4 | 1 | Haloarcula marismortui | ||
| 3 | C (A) | 50S ribosomal protein L2P | polymer | 240 | 25354.7 | 1 | UniProt (P20276) Pfam (PF00181) Pfam (PF03947) | Haloarcula marismortui | Hl4, Hmal2 |
| 4 | D (B) | 50S ribosomal protein L3P | polymer | 338 | 37396.4 | 1 | UniProt (P20279) Pfam (PF00297) | Haloarcula marismortui | Hl1, Hmal3 |
| 5 | E (C) | 50S ribosomal protein L4P | polymer | 246 | 26457.1 | 1 | UniProt (P12735) Pfam (PF00573) | Haloarcula marismortui | Hl6, Hmal4 |
| 6 | F (D) | 50S ribosomal protein L5P | polymer | 177 | 19551.7 | 1 | UniProt (P14124) Pfam (PF00673) Pfam (PF00281) | Haloarcula marismortui | Hl13, Hmal5 |
| 7 | G (E) | 50S ribosomal protein L6P | polymer | 178 | 19961.7 | 1 | UniProt (P14135) Pfam (PF00347) | Haloarcula marismortui | Hl10, Hmal6 |
| 8 | H (F) | 50S ribosomal protein L7Ae | polymer | 120 | 12791.9 | 1 | UniProt (P12743) Pfam (PF01248) | Haloarcula marismortui | Hs6 |
| 9 | I (G) | 50S ribosomal protein L10E | polymer | 255 | 26454.5 | 1 | UniProt (P15825) Pfam (PF00466) Pfam (PF17777) | Haloarcula marismortui | Ribosomal protein L10, Acidic ribosomal protein P0 homolog, HMal10, L10E |
| 10 | J (H) | 50S ribosomal protein L10e | polymer | 177 | 19942.7 | 1 | UniProt (P60617) Pfam (PF00252) | Haloarcula marismortui | |
| 11 | K (I) | 50S ribosomal protein L11P | polymer | 162 | 17097.5 | 1 | UniProt (P14122) Pfam (PF03946) Pfam (PF00298) | Haloarcula marismortui | Hmal11 |
| 12 | L (J) | 50S ribosomal protein L13P | polymer | 145 | 16249.2 | 1 | UniProt (P29198) Pfam (PF00572) | Haloarcula marismortui | Hmal13 |
| 13 | M (K) | 50S ribosomal protein L14P | polymer | 132 | 14216.2 | 1 | UniProt (P22450) Pfam (PF00238) | Haloarcula marismortui | Hl27, Hmal14 |
| 14 | N (L) | 50S ribosomal protein L15P | polymer | 165 | 18005.4 | 1 | UniProt (P12737) Pfam (PF00828) | Haloarcula marismortui | Hl9, Hmal15 |
| 15 | O (M) | 50S ribosomal protein L15e | polymer | 196 | 22404.3 | 1 | UniProt (P60618) Pfam (PF00827) | Haloarcula marismortui | 50S ribosomal protein LC12 |
| 16 | P (N) | 50S ribosomal protein L18P | polymer | 187 | 20640.9 | 1 | UniProt (P14123) Pfam (PF17144) | Haloarcula marismortui | Hl12, Hmal18 |
| 17 | Q (O) | 50S ribosomal protein L18e | polymer | 116 | 12438.9 | 1 | UniProt (P12733) Pfam (PF00828) | Haloarcula marismortui | Hl29, L19 |
| 18 | R (P) | 50S ribosomal protein L19e | polymer | 149 | 16796.5 | 1 | UniProt (P14119) Pfam (PF01280) | Haloarcula marismortui | Hl24, Hmal19 |
| 19 | S (Q) | 50S ribosomal protein L21e | polymer | 96 | 10567.8 | 1 | UniProt (P12734) Pfam (PF01157) | Haloarcula marismortui | Hl31 |
| 20 | T (R) | 50S ribosomal protein L22P | polymer | 155 | 16966.9 | 1 | UniProt (P10970) Pfam (PF00237) | Haloarcula marismortui | Hl23, Hmal22 |
| 21 | U (S) | 50S ribosomal protein L23P | polymer | 85 | 9612.5 | 1 | UniProt (P12732) Pfam (PF00276) | Haloarcula marismortui | Hl25, Hmal23, L21 |
| 22 | V (T) | 50S ribosomal protein L24P | polymer | 120 | 13671.0 | 1 | UniProt (P10972) Pfam (PF16906) Pfam (PF00467) | Haloarcula marismortui | Hl15, Hl16, Hmal24 |
| 23 | W (U) | 50S ribosomal protein L24e | polymer | 67 | 7364.9 | 1 | UniProt (P14116) Pfam (PF01246) | Haloarcula marismortui | Hl21/Hl22 |
| 24 | X (V) | 50S ribosomal protein L29P | polymer | 71 | 7889.9 | 1 | UniProt (P10971) Pfam (PF00831) | Haloarcula marismortui | Hl33, Hmal29 |
| 25 | Y (W) | 50S ribosomal protein L30P | polymer | 154 | 17062.9 | 1 | UniProt (P14121) Pfam (PF00327) | Haloarcula marismortui | Hl16, Hl20, Hmal30 |
| 26 | Z (X) | 50S ribosomal protein L31e | polymer | 92 | 10384.6 | 1 | UniProt (P18138) Pfam (PF01198) | Haloarcula marismortui | Hl30, L34 |
| 27 | AA (Y) | 50S ribosomal protein L32e | polymer | 241 | 26455.7 | 1 | UniProt (P12736) Pfam (PF14520) Pfam (PF01655) | Haloarcula marismortui | Hl5 |
| 28 | BA (Z) | 50S ribosomal protein L37Ae | polymer | 92 | 10189.2 | 1 | UniProt (P60619) Pfam (PF01780) | Haloarcula marismortui | |
| 29 | CA (1) | 50S ribosomal protein L37e | polymer | 57 | 6330.2 | 1 | UniProt (P32410) Pfam (PF01907) | Haloarcula marismortui | L35e |
| 30 | DA (2) | 50S ribosomal protein L39e | polymer | 50 | 6133.1 | 1 | UniProt (P22452) Pfam (PF00832) | Haloarcula marismortui | Hl39e, Hl46e |
| 31 | EA (3) | 50S ribosomal protein L44e | polymer | 92 | 10815.2 | 1 | UniProt (P32411) Pfam (PF00935) | Haloarcula marismortui | HLA, La |
| 32 | FA, GA (4, 5) | 50S ribosomal protein L12 | polymer | 70 | 5975.4 | 2 | Haloarcula marismortui | Hmal12 | |
| 33 | HA (6) | 50S ribosomal protein LX | polymer | 56 | 6394.9 | 1 | UniProt (P14125) Pfam (PF01775) | Haloarcula marismortui | HL32 |
| 34 | AB, AC, AD, AE, AI... (0, T, Y, K, 3...) | MAGNESIUM ION | non-polymer | 24.3 | 138 | Chemie (MG) | |||
| 35 | KI, ME, TJ (0, O) | POTASSIUM ION | non-polymer | 39.1 | 3 | Chemie (K) | |||
| 36 | AF, AG, AH, BF, BG... (0, H, J, L, M...) | SODIUM ION | non-polymer | 23.0 | 85 | Chemie (NA) | |||
| 37 | AJ, EJ, EK, FJ, GH... (G, J, Y, 0, L...) | CHLORIDE ION | non-polymer | 35.5 | 30 | Chemie (CL) | |||
| 38 | CK, LI, MI, NI (W, 0) | ACETIC ACID | non-polymer | 60.1 | 4 | Chemie (ACY) | |||
| 39 | BK, IK, JK, LK, QJ (U, Z, 1, 3, O) | CADMIUM ION | non-polymer | 112.4 | 5 | Chemie (CD) | |||
| 40 | AL, BL, CL, DL, EL... (L, M, N, O, P...) | water | water | 18.0 | 7745 | Chemie (HOH) |
Sequence modifications
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 34 |
| Total formula weight | 1479111.8 | |
| Non-Polymers* | Number of molecules | 265 |
| Total formula weight | 7291.4 | |
| All* | Total formula weight | 1486403.2 |
