4V9F

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	0	23S Ribosomal RNA	polymer	2910	942258.9	1		Haloarcula marismortui
2	9	5S Ribosomal RNA	polymer	122	39303.4	1		Haloarcula marismortui
3	A	50S ribosomal protein L2P	polymer	240	25354.7	1	UniProt (P20276) Pfam (PF00181) Pfam (PF03947) In PDB	Haloarcula marismortui	Hl4, Hmal2
4	B	50S ribosomal protein L3P	polymer	338	37396.4	1	UniProt (P20279) Pfam (PF00297) In PDB	Haloarcula marismortui	Hl1, Hmal3
5	C	50S ribosomal protein L4P	polymer	246	26457.1	1	UniProt (P12735) Pfam (PF00573) In PDB	Haloarcula marismortui	Hl6, Hmal4
6	D	50S ribosomal protein L5P	polymer	177	19551.7	1	UniProt (P14124) Pfam (PF00673) Pfam (PF00281) In PDB	Haloarcula marismortui	Hl13, Hmal5
7	E	50S ribosomal protein L6P	polymer	178	19961.7	1	UniProt (P14135) Pfam (PF00347) In PDB	Haloarcula marismortui	Hl10, Hmal6
8	F	50S ribosomal protein L7Ae	polymer	120	12791.9	1	UniProt (P12743) Pfam (PF01248) In PDB	Haloarcula marismortui	Hs6
9	G	50S ribosomal protein L10E	polymer	255	26454.5	1	UniProt (P15825) Pfam (PF00466) Pfam (PF17777) In PDB	Haloarcula marismortui	Ribosomal protein L10, Acidic ribosomal protein P0 homolog, HMal10, L10E
10	H	50S ribosomal protein L10e	polymer	177	19942.7	1	UniProt (P60617) Pfam (PF00252) In PDB	Haloarcula marismortui
11	I	50S ribosomal protein L11P	polymer	162	17097.5	1	UniProt (P14122) Pfam (PF03946) Pfam (PF00298) In PDB	Haloarcula marismortui	Hmal11
12	J	50S ribosomal protein L13P	polymer	145	16249.2	1	UniProt (P29198) Pfam (PF00572) In PDB	Haloarcula marismortui	Hmal13
13	K	50S ribosomal protein L14P	polymer	132	14216.2	1	UniProt (P22450) Pfam (PF00238) In PDB	Haloarcula marismortui	Hl27, Hmal14
14	L	50S ribosomal protein L15P	polymer	165	18005.4	1	UniProt (P12737) Pfam (PF00828) In PDB	Haloarcula marismortui	Hl9, Hmal15
15	M	50S ribosomal protein L15e	polymer	196	22404.3	1	UniProt (P60618) Pfam (PF00827) In PDB	Haloarcula marismortui	50S ribosomal protein LC12
16	N	50S ribosomal protein L18P	polymer	187	20640.9	1	UniProt (P14123) Pfam (PF17144) In PDB	Haloarcula marismortui	Hl12, Hmal18
17	O	50S ribosomal protein L18e	polymer	116	12438.9	1	UniProt (P12733) Pfam (PF00828) In PDB	Haloarcula marismortui	Hl29, L19
18	P	50S ribosomal protein L19e	polymer	149	16796.5	1	UniProt (P14119) Pfam (PF01280) In PDB	Haloarcula marismortui	Hl24, Hmal19
19	Q	50S ribosomal protein L21e	polymer	96	10567.8	1	UniProt (P12734) Pfam (PF01157) In PDB	Haloarcula marismortui	Hl31
20	R	50S ribosomal protein L22P	polymer	155	16966.9	1	UniProt (P10970) Pfam (PF00237) In PDB	Haloarcula marismortui	Hl23, Hmal22
21	S	50S ribosomal protein L23P	polymer	85	9612.5	1	UniProt (P12732) Pfam (PF00276) In PDB	Haloarcula marismortui	Hl25, Hmal23, L21
22	T	50S ribosomal protein L24P	polymer	120	13671.0	1	UniProt (P10972) Pfam (PF16906) Pfam (PF00467) In PDB	Haloarcula marismortui	Hl15, Hl16, Hmal24
23	U	50S ribosomal protein L24e	polymer	67	7364.9	1	UniProt (P14116) Pfam (PF01246) In PDB	Haloarcula marismortui	Hl21/Hl22
24	V	50S ribosomal protein L29P	polymer	71	7889.9	1	UniProt (P10971) Pfam (PF00831) In PDB	Haloarcula marismortui	Hl33, Hmal29
25	W	50S ribosomal protein L30P	polymer	154	17062.9	1	UniProt (P14121) Pfam (PF00327) In PDB	Haloarcula marismortui	Hl16, Hl20, Hmal30
26	X	50S ribosomal protein L31e	polymer	92	10384.6	1	UniProt (P18138) Pfam (PF01198) In PDB	Haloarcula marismortui	Hl30, L34
27	Y	50S ribosomal protein L32e	polymer	241	26455.7	1	UniProt (P12736) Pfam (PF14520) Pfam (PF01655) In PDB	Haloarcula marismortui	Hl5
28	Z	50S ribosomal protein L37Ae	polymer	92	10189.2	1	UniProt (P60619) Pfam (PF01780) In PDB	Haloarcula marismortui
29	1	50S ribosomal protein L37e	polymer	57	6330.2	1	UniProt (P32410) Pfam (PF01907) In PDB	Haloarcula marismortui	L35e
30	2	50S ribosomal protein L39e	polymer	50	6133.1	1	UniProt (P22452) Pfam (PF00832) In PDB	Haloarcula marismortui	Hl39e, Hl46e
31	3	50S ribosomal protein L44e	polymer	92	10815.2	1	UniProt (P32411) Pfam (PF00935) In PDB	Haloarcula marismortui	HLA, La
32	4, 5	50S ribosomal protein L12	polymer	70	5975.4	2		Haloarcula marismortui	Hmal12
33	6	50S ribosomal protein LX	polymer	56	6394.9	1	UniProt (P14125) Pfam (PF01775) In PDB	Haloarcula marismortui	HL32
34	0, T, Y, K, 3...	MAGNESIUM ION	non-polymer		24.3	138	Chemie (MG)
35	0, O	POTASSIUM ION	non-polymer		39.1	3	Chemie (K)
36	0, H, J, L, M...	SODIUM ION	non-polymer		23.0	85	Chemie (NA)
37	G, J, Y, 0, L...	CHLORIDE ION	non-polymer		35.5	30	Chemie (CL)
38	W, 0	ACETIC ACID	non-polymer		60.1	4	Chemie (ACY)
39	U, Z, 1, 3, O	CADMIUM ION	non-polymer		112.4	5	Chemie (CD)
40		water	water		18.0	7745	Chemie (HOH)

Sequence modifications

G: 6 - 211 (UniProt: P15825)
G: 213 - 261 (PDB: 4V9F)

Contents of the asymmetric unit

Polymers	Number of chains	34
	Total formula weight	1479111.8
Non-Polymers*	Number of molecules	265
	Total formula weight	7291.4
All*	Total formula weight	1486403.2

*Water molecules are not included.