4V9A
Crystal Structure of the 70S ribosome with tetracycline.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, BB (AA, CA) | 16S ribosomal RNA | polymer | 1506 | 489002.5 | 2 | GenBank (AP008226.1) | Thermus thermophilus | |
| 2 | B, CB (AE, CE) | 30S RIBOSOMAL PROTEIN S2 | polymer | 256 | 29317.7 | 2 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
| 3 | C, DB (AF, CF) | 30S RIBOSOMAL PROTEIN S3 | polymer | 239 | 26751.1 | 2 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus | |
| 4 | D, EB (AG, CG) | 30S RIBOSOMAL PROTEIN S4 | polymer | 208 | 24242.3 | 2 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 5 | E, FB (AH, CH) | 30S RIBOSOMAL PROTEIN S5 | polymer | 162 | 17583.4 | 2 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus | |
| 6 | F, GB (AI, CI) | 30S RIBOSOMAL PROTEIN S6 | polymer | 101 | 11988.8 | 2 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus | |
| 7 | G, HB (AJ, CJ) | 30S RIBOSOMAL PROTEIN S7 | polymer | 156 | 18051.0 | 2 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 8 | H, IB (AK, CK) | 30S RIBOSOMAL PROTEIN S8 | polymer | 138 | 15868.6 | 2 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus | |
| 9 | I, JB (AL, CL) | 30S RIBOSOMAL PROTEIN S9 | polymer | 128 | 14410.6 | 2 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus | |
| 10 | J, KB (AM, CM) | 30S RIBOSOMAL PROTEIN S10 | polymer | 105 | 11955.0 | 2 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus | |
| 11 | K, LB (AN, CN) | 30S RIBOSOMAL PROTEIN S11 | polymer | 129 | 13737.9 | 2 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
| 12 | L, MB (AO, CO) | 30S RIBOSOMAL PROTEIN S12 | polymer | 128 | 14264.9 | 2 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus | |
| 13 | M, NB (AP, CP) | 30S RIBOSOMAL PROTEIN S13 | polymer | 126 | 14338.9 | 2 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
| 14 | N, OB (AQ, CQ) | 30S RIBOSOMAL PROTEIN S14 | polymer | 61 | 7158.7 | 2 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus | |
| 15 | O, PB (AR, CR) | 30S RIBOSOMAL PROTEIN S15 | polymer | 89 | 10578.4 | 2 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus | |
| 16 | P, QB (AS, CS) | 30S RIBOSOMAL PROTEIN S16 | polymer | 88 | 10410.0 | 2 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus | |
| 17 | Q, RB (AT, CT) | 30S RIBOSOMAL PROTEIN S17 | polymer | 105 | 12325.7 | 2 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus | |
| 18 | R, SB (AU, CU) | 30S RIBOSOMAL PROTEIN S18 | polymer | 88 | 10258.3 | 2 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus | |
| 19 | S, TB (AV, CV) | 30S RIBOSOMAL PROTEIN S19 | polymer | 93 | 10605.5 | 2 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus | |
| 20 | T, UB (AW, CW) | 30S RIBOSOMAL PROTEIN S20 | polymer | 106 | 11736.1 | 2 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus | |
| 21 | U, VB (AX, CX) | 30S RIBOSOMAL PROTEIN THX | polymer | 27 | 3350.0 | 2 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus | |
| 22 | V, WB (AC, CC) | TRNA-FMET | polymer | 77 | 24801.8 | 2 | GenBank (AP008226.1) | Thermus thermophilus | |
| 23 | W, XB (A1, C1) | MRNA | polymer | 4 | 1241.8 | 2 | Synthetic DNA | ||
| 24 | X, YB (BA, DA) | 23S ribosomal RNA | polymer | 2912 | 947013.0 | 2 | GenBank (AP008226.1) | Thermus thermophilus | |
| 25 | Y, ZB (BB, DB) | 5S RIBOSOMAL RNA | polymer | 122 | 39540.6 | 2 | GenBank (AP008226.1) | Thermus thermophilus | |
| 26 | AC, Z (BD, DD) | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 2 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus | |
| 27 | AA, BC (BE, DE) | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q5SHN8) Pfam (PF00297) | Thermus thermophilus | |
| 28 | BA, CC (BF, DF) | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 2 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus | |
| 29 | CA, DC (BG, DG) | 50S ribosomal protein L5 | polymer | 182 | 21061.6 | 2 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus | |
| 30 | DA, EC (BH, DH) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (Q5SHQ3) Pfam (PF00347) UniProt (by SIFTS) (P0DOY8) | Thermus thermophilus | |
| 31 | EA, FC (BK, DK) | 50S ribosomal protein L9 | polymer | 148 | 16422.2 | 2 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus | |
| 32 | FA, GC (BM, DM) | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 2 | UniProt (P60488) Pfam (PF00572) | Thermus thermophilus | |
| 33 | GA, HC (BN, DN) | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 2 | UniProt (Q5SHP8) Pfam (PF00238) | Thermus thermophilus | |
| 34 | HA, IC (BO, DO) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q5SHQ7) Pfam (PF00828) | Thermus thermophilus | |
| 35 | IA, JC (BP, DP) | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 2 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus | |
| 36 | JA, KC (B0, D0) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus | |
| 37 | KA, LC (BQ, DQ) | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 2 | UniProt (Q5SHQ4) Pfam (PF00861) | Thermus thermophilus | |
| 38 | LA, MC (BR, DR) | 50S ribosomal protein L19 | polymer | 146 | 17188.8 | 2 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus | |
| 39 | MA, NC (B1, D1) | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 2 | UniProt (P60491) Pfam (PF00453) | Thermus thermophilus | |
| 40 | NA, OC (B2, D2) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (P60492) Pfam (PF00829) | Thermus thermophilus | |
| 41 | OA, PC (BS, DS) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q5SHP3) Pfam (PF00237) | Thermus thermophilus | |
| 42 | PA, QC (BT, DT) | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q5SHP0) Pfam (PF00276) | Thermus thermophilus | |
| 43 | QA, RC (BU, DU) | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus | |
| 44 | RA, SC (BV, DV) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus | |
| 45 | SA, TC (B3, D3) | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 2 | UniProt (P60493) Pfam (PF01016) | Thermus thermophilus | |
| 46 | TA, UC (BZ, DZ) | 50S ribosomal protein L28 | polymer | 98 | 11004.2 | 2 | UniProt (P60494) Pfam (PF00830) | Thermus thermophilus | |
| 47 | UA, VC (BW, DW) | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q5SHP6) Pfam (PF00831) | Thermus thermophilus | |
| 48 | VA, WC (BX, DX) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q5SHQ6) Pfam (PF00327) | Thermus thermophilus | |
| 49 | WA, XC (B4, D4) | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q5SJE1) Pfam (PF01197) | Thermus thermophilus | |
| 50 | XA, YC (B5, D5) | 50S ribosomal protein L32 | polymer | 60 | 6722.1 | 2 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus | |
| 51 | YA, ZC (B6, D6) | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (P35871) Pfam (PF00471) | Thermus thermophilus | |
| 52 | AD, ZA (B7, D7) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus | |
| 53 | AB, BD (B8, D8) | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 2 | UniProt (Q5SKU1) Pfam (PF01632) | Thermus thermophilus | |
| 54 | AAA, AAB, ABA, ABB, ACA... (BA, DA, AA, BB, BP...) | MAGNESIUM ION | non-polymer | 24.3 | 1687 | Chemie (MG) | |||
| 55 | AM, MUA (AA, CA) | TETRACYCLINE | non-polymer | 444.4 | 2 | Chemie (TAC) | |||
| 56 | DM, JM, PUA, RUA (AG, AQ, CG, CQ) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) |
Sequence modifications
AC, CC: 1 - 76 (GenBank: AP008226.1)
BA, DA: 1 - 2902 (GenBank: AP008226.1)
| PDB | External Database | Details |
|---|---|---|
| C 17 | U 1683502 | conflict |
| U 50 | C 1683535 | conflict |
| C 51 | G 1683536 | conflict |
| G 63 | C 1683548 | conflict |
| PDB | External Database | Details |
|---|---|---|
| U 161 | - | insertion |
| A 654 | G 352709 | conflict |
| C 654 | G 352713 | conflict |
| G 654 | C 352724 | conflict |
| A 654 | C 352728 | conflict |
| U 1058 | G 353133 | conflict |
| A 1080 | C 353155 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 106 |
| Total formula weight | 4368040.8 | |
| Non-Polymers* | Number of molecules | 1693 |
| Total formula weight | 42153.0 | |
| All* | Total formula weight | 4410193.9 |
