4V90

Thermus thermophilus Ribosome

This is a non-PDB format compatible entry.

Replaces:  4BTC

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	AA	16S RIBOSOMAL RNA	polymer	1519	493040.8	1	GenBank (48256)	THERMUS THERMOPHILUS HB8
2	AB	30S RIBOSOMAL PROTEIN S2	polymer	256	29317.7	1	UniProt (P80371) Pfam (PF00318) In PDB	THERMUS THERMOPHILUS HB8
3	AC	30S RIBOSOMAL PROTEIN S3	polymer	239	26751.1	1	UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB	THERMUS THERMOPHILUS HB8
4	AD	30S RIBOSOMAL PROTEIN S4	polymer	209	24373.4	1	UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB	THERMUS THERMOPHILUS HB8
5	AE	30S RIBOSOMAL PROTEIN S5	polymer	162	17583.4	1	UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB	THERMUS THERMOPHILUS HB8
6	AF	30S RIBOSOMAL PROTEIN S6	polymer	101	11988.8	1	UniProt (Q5SLP8) Pfam (PF01250) In PDB	THERMUS THERMOPHILUS HB8
7	AG	30S RIBOSOMAL PROTEIN S7	polymer	156	18051.0	1	UniProt (P17291) Pfam (PF00177) In PDB	THERMUS THERMOPHILUS HB8
8	AH	30S RIBOSOMAL PROTEIN S8	polymer	138	15868.6	1	UniProt (Q5SHQ2) In PDB	THERMUS THERMOPHILUS HB8
9	AI	30S RIBOSOMAL PROTEIN S9	polymer	128	14410.6	1	UniProt (P80374) Pfam (PF00380) In PDB	THERMUS THERMOPHILUS HB8
10	AJ	30S RIBOSOMAL PROTEIN S10	polymer	105	11955.0	1	UniProt (Q5SHN7) Pfam (PF00338) In PDB	THERMUS THERMOPHILUS HB8
11	AK	30S RIBOSOMAL PROTEIN S11	polymer	129	13737.9	1	UniProt (P80376) Pfam (PF00411) In PDB	THERMUS THERMOPHILUS HB8
12	AL	30S RIBOSOMAL PROTEIN S12	polymer	132	14637.4	1	UniProt (Q5SHN3) Pfam (PF00164) In PDB	THERMUS THERMOPHILUS HB8
13	AM	30S RIBOSOMAL PROTEIN S13	polymer	126	14338.9	1	UniProt (P80377) Pfam (PF00416) In PDB	THERMUS THERMOPHILUS HB8
14	AN	30S RIBOSOMAL PROTEIN S14 TYPE Z	polymer	61	7158.7	1	UniProt (Q5SHQ1) In PDB	THERMUS THERMOPHILUS HB8
15	AO	30S RIBOSOMAL PROTEIN S15	polymer	89	10578.4	1	UniProt (Q5SJ76) Pfam (PF00312) In PDB	THERMUS THERMOPHILUS HB8
16	AP	30S RIBOSOMAL PROTEIN S16	polymer	88	10410.0	1	UniProt (Q5SJH3) Pfam (PF00886) In PDB	THERMUS THERMOPHILUS HB8
17	AQ	30S RIBOSOMAL PROTEIN S17	polymer	105	12325.7	1	UniProt (Q5SHP7) In PDB	THERMUS THERMOPHILUS HB8
18	AR	30S RIBOSOMAL PROTEIN S18	polymer	88	10258.3	1	UniProt (Q5SLQ0) Pfam (PF01084) In PDB	THERMUS THERMOPHILUS HB8
19	AS	30S RIBOSOMAL PROTEIN S19	polymer	93	10605.5	1	UniProt (Q5SHP2) Pfam (PF00203) In PDB	THERMUS THERMOPHILUS HB8
20	AT	30S RIBOSOMAL PROTEIN S20	polymer	106	11736.1	1	UniProt (P80380) Pfam (PF01649) In PDB	THERMUS THERMOPHILUS HB8
21	AU	30S RIBOSOMAL PROTEIN THX	polymer	27	3350.0	1	UniProt (Q5SIH3) Pfam (PF17070) In PDB	THERMUS THERMOPHILUS HB8
22	AV	RNA (77-MER)	polymer	76	24484.6	1		THERMUS THERMOPHILUS HB8
23	AX	5'-R(*UP*AP*AP*AP*AP*AP*UP*GP*UP)-3'	polymer	9	2840.8	1		synthetic construct
24	AY	ELONGATION FACTOR G	polymer	691	76977.1	1	UniProt (Q5SHN5) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) In PDB	THERMUS THERMOPHILUS HB8
25	B0	50S RIBOSOMAL PROTEIN L27	polymer	84	9397.9	1	UniProt (P60493) Pfam (PF01016) In PDB	THERMUS THERMOPHILUS HB8
26	B1	50S RIBOSOMAL PROTEIN L28	polymer	97	10873.0	1	UniProt (P60494) Pfam (PF00830) In PDB	THERMUS THERMOPHILUS HB8
27	B2	50S RIBOSOMAL PROTEIN L29	polymer	71	8539.1	1	UniProt (Q5SHP6) Pfam (PF00831) In PDB	THERMUS THERMOPHILUS HB8
28	B3	50S RIBOSOMAL PROTEIN L30	polymer	60	6799.1	1	UniProt (Q5SHQ6) Pfam (PF00327) In PDB	THERMUS THERMOPHILUS HB8
29	B4	50S RIBOSOMAL PROTEIN L31	polymer	71	8300.5	1	UniProt (Q5SJE1) Pfam (PF01197) In PDB	THERMUS THERMOPHILUS HB8
30	B5	50S RIBOSOMAL PROTEIN L32	polymer	59	6590.9	1	UniProt (P80339) Pfam (PF01783) In PDB	THERMUS THERMOPHILUS HB8
31	B6	50S RIBOSOMAL PROTEIN L33	polymer	53	6501.7	1	UniProt (P35871) Pfam (PF00471) In PDB	THERMUS THERMOPHILUS HB8
32	B7	50S RIBOSOMAL PROTEIN L34	polymer	48	5975.3	1	UniProt (P80340) Pfam (PF00468) In PDB	THERMUS THERMOPHILUS HB8
33	B8	50S RIBOSOMAL PROTEIN L35	polymer	64	7375.0	1	UniProt (Q5SKU1) Pfam (PF01632) In PDB	THERMUS THERMOPHILUS HB8
34	B9	50S RIBOSOMAL PROTEIN L36	polymer	37	4435.4	1	UniProt (Q5SHR2) Pfam (PF00444) In PDB	THERMUS THERMOPHILUS HB8
35	BA	23S RIBOSOMAL RNA	polymer	2915	947959.5	1	GenBank (55771382)	THERMUS THERMOPHILUS HB8
36	BB	5S RIBOSOMAL RNA	polymer	122	39540.6	1	GenBank (55979969)	THERMUS THERMOPHILUS HB8
37	BC	RIBOSOMAL PROTEIN L1	polymer	228	24741.5	1	UniProt (Q5SLP7) Pfam (PF00687) In PDB	THERMUS THERMOPHILUS HB8
38	BD	50S RIBOSOMAL PROTEIN L2	polymer	275	30401.4	1	UniProt (P60405) Pfam (PF00181) Pfam (PF03947) In PDB	THERMUS THERMOPHILUS HB8
39	BE	50S RIBOSOMAL PROTEIN L3	polymer	206	22450.2	1	UniProt (Q5SHN8) Pfam (PF00297) In PDB	THERMUS THERMOPHILUS HB8
40	BF	50S RIBOSOMAL PROTEIN L4	polymer	210	23271.9	1	UniProt (Q5SHN9) Pfam (PF00573) In PDB	THERMUS THERMOPHILUS HB8
41	BG	50S RIBOSOMAL PROTEIN L5	polymer	181	20930.4	1	UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) In PDB	THERMUS THERMOPHILUS HB8
42	BH	50S RIBOSOMAL PROTEIN L6	polymer	180	19568.9	1	UniProt (Q5SHQ3) In PDB	THERMUS THERMOPHILUS HB8
43	BJ	CHAIN J	polymer	130	11109.7	1		THERMUS THERMOPHILUS HB8
44	BK	CHAIN K	polymer	140	11932.7	1		THERMUS THERMOPHILUS HB8
45	BL	CHAIN L	polymer	71	6060.5	1		THERMUS THERMOPHILUS HB8
46	BN	50S RIBOSOMAL PROTEIN L13	polymer	140	15927.9	1	UniProt (P60488) Pfam (PF00572) In PDB	THERMUS THERMOPHILUS HB8
47	BO	50S RIBOSOMAL PROTEIN L14	polymer	122	13323.6	1	UniProt (Q5SHP8) Pfam (PF00238) In PDB	THERMUS THERMOPHILUS HB8
48	BP	50S RIBOSOMAL PROTEIN L15	polymer	149	16187.9	1	UniProt (Q5SHQ7) Pfam (PF00828) In PDB	THERMUS THERMOPHILUS HB8
49	BQ	50S RIBOSOMAL PROTEIN L16	polymer	141	15993.9	1	UniProt (P60489) Pfam (PF00252) In PDB	THERMUS THERMOPHILUS HB8
50	BR	50S RIBOSOMAL PROTEIN L17	polymer	117	13619.0	1	UniProt (Q9Z9H5) Pfam (PF01196) In PDB	THERMUS THERMOPHILUS HB8
51	BS	50S RIBOSOMAL PROTEIN L18	polymer	111	12508.6	1	UniProt (Q5SHQ4) Pfam (PF00861) In PDB	THERMUS THERMOPHILUS HB8
52	BT	50S RIBOSOMAL PROTEIN L19	polymer	146	17188.8	1	UniProt (P60490) Pfam (PF01245) In PDB	THERMUS THERMOPHILUS HB8
53	BU	50S RIBOSOMAL PROTEIN L20	polymer	117	13648.1	1	UniProt (P60491) Pfam (PF00453) In PDB	THERMUS THERMOPHILUS HB8
54	BV	50S RIBOSOMAL PROTEIN L21	polymer	101	11069.2	1	UniProt (P60492) Pfam (PF00829) In PDB	THERMUS THERMOPHILUS HB8
55	BW	50S RIBOSOMAL PROTEIN L22	polymer	113	12808.1	1	UniProt (Q5SHP3) Pfam (PF00237) In PDB	THERMUS THERMOPHILUS HB8
56	BX	50S RIBOSOMAL PROTEIN L23	polymer	95	10628.6	1	UniProt (Q5SHP0) Pfam (PF00276) In PDB	THERMUS THERMOPHILUS HB8
57	BY	50S RIBOSOMAL PROTEIN L24	polymer	109	11954.4	1	UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) In PDB	THERMUS THERMOPHILUS HB8
58	BZ	50S RIBOSOMAL PROTEIN L25	polymer	205	23107.4	1	UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) In PDB	THERMUS THERMOPHILUS HB8
59	AA, B0, BA, B5, BC...	MAGNESIUM ION	non-polymer		24.3	523	Chemie (MG)
60	B9, AD, AN	ZINC ION	non-polymer		65.4	3	Chemie (ZN)
61	AY	PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER	non-polymer		521.2	1	Chemie (GCP)
62		water	water		18.0	2	Chemie (HOH)

Sequence modifications

AA: 1 - 1542 (GenBank: 48256)

PDB	External Database	Details
C 1030	-	insertion
G 1034	-	insertion
A 1245	-	insertion
C 1246	-	insertion

BA: 1 - 2906 (GenBank: 55771382)

PDB	External Database	Details
G 2155	A 11394	conflict

Contents of the asymmetric unit

Polymers	Number of chains	58
	Total formula weight	2307500.1
Non-Polymers*	Number of molecules	527
	Total formula weight	13429.0
All*	Total formula weight	2320929.1

*Water molecules are not included.