4V8P
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, JF, PD, VB (A1, D1, F1, H1) | 26S RRNA | polymer | 3354 | 1084310.3 | 4 | GenBank (JN547815) | TETRAHYMENA THERMOPHILA | |
| 2 | B, KF, QD, WB (AA, DA, FA, HA) | RIBOSOMAL PROTEIN L37 | polymer | 94 | 10703.6 | 4 | UniProt (P0DJ24) Pfam (PF01907) | TETRAHYMENA THERMOPHILA | RPL37 |
| 3 | C, LF, RD, XB (AB, DB, FB, HB) | RPL39 | polymer | 52 | 6607.8 | 4 | UniProt (P0DJ61) Pfam (PF00832) | TETRAHYMENA THERMOPHILA | |
| 4 | D, MF, SD, YB (AC, DC, FC, HC) | 60S RIBOSOMAL PROTEIN L36A | polymer | 109 | 12786.3 | 4 | UniProt (Q22X38) Pfam (PF00935) | TETRAHYMENA THERMOPHILA | 60S RIBOSOMAL PROTEIN L44 |
| 5 | E, NF, TD, ZB (AE, DE, FE, HE) | RPL6 | polymer | 191 | 21777.3 | 4 | UniProt (P0DJ56) Pfam (PF01159) | TETRAHYMENA THERMOPHILA | |
| 6 | AC, F, OF, UD (AF, DF, FF, HF) | RPL14 | polymer | 126 | 14629.5 | 4 | UniProt (Q24C27) Pfam (PF00467) Pfam (PF01929) | TETRAHYMENA THERMOPHILA | |
| 7 | BC, G, PF, VD (AG, DG, FG, HG) | RPL30 | polymer | 104 | 11368.2 | 4 | UniProt (P0DJ59) Pfam (PF01248) | TETRAHYMENA THERMOPHILA | |
| 8 | CC, H, QF, WD (AH, DH, FH, HH) | RPL35A | polymer | 113 | 12650.6 | 4 | UniProt (P0DJ22) Pfam (PF01247) | TETRAHYMENA THERMOPHILA | |
| 9 | DC, I, RF, XD (AJ, DJ, FJ, HJ) | TRANSLATION INITIATION FACTOR EIF-6, PUTATIVE FAMILY PROTEIN | polymer | 248 | 27188.8 | 4 | UniProt (Q245F2) Pfam (PF01912) | TETRAHYMENA THERMOPHILA | EIF6 |
| 10 | EC, J, SF, YD (AK, DK, FK, HK) | UBIQUITIN-60S RIBOSOMAL PROTEIN L40 | polymer | 129 | 14599.1 | 4 | UniProt (P0DJ25) Pfam (PF00240) Pfam (PF01020) | TETRAHYMENA THERMOPHILA | UBIQUITIN, 60S RIBOSOMAL PROTEIN L40, CEP52, CEP53 RPL40 |
| 11 | FC, K, TF, ZD (AL, DL, FL, HL) | RPL34 | polymer | 123 | 14071.7 | 4 | UniProt (P0DJ23) Pfam (PF01199) | TETRAHYMENA THERMOPHILA | |
| 12 | AE, GC, L, UF (AM, DM, FM, HM) | RIBOSOMAL PROTEIN L22 | polymer | 118 | 13804.0 | 4 | UniProt (Q23BV5) Pfam (PF01776) | TETRAHYMENA THERMOPHILA | RPL22 |
| 13 | BE, HC, M, VF (AN, DN, FN, HN) | RPL27 | polymer | 144 | 16767.9 | 4 | UniProt (P0DJ19) Pfam (PF01777) | TETRAHYMENA THERMOPHILA | |
| 14 | CE, IC, N, WF (AO, DO, FO, HO) | RPL28 | polymer | 134 | 14695.1 | 4 | UniProt (P0DJ20) Pfam (PF01778) | TETRAHYMENA THERMOPHILA | |
| 15 | DE, JC, O, XF (AP, DP, FP, HP) | RPL38 | polymer | 89 | 10219.3 | 4 | UniProt (Q22SV3) Pfam (PF01781) | TETRAHYMENA THERMOPHILA | |
| 16 | EE, KC, P, YF (AQ, DQ, FQ, HQ) | 60S RIBOSOMAL PROTEIN L36 | polymer | 104 | 11703.1 | 4 | UniProt (Q24F59) Pfam (PF01158) | TETRAHYMENA THERMOPHILA | RPL36 |
| 17 | FE, LC, Q, ZF (AT, DT, FT, HT) | RPL29 | polymer | 66 | 7742.1 | 4 | UniProt (P0DJ21) Pfam (PF01779) | TETRAHYMENA THERMOPHILA | |
| 18 | AG, GE, MC, R (AU, DU, FU, HU) | RPL13 | polymer | 206 | 23390.3 | 4 | UniProt (P0DJ58) Pfam (PF01294) | TETRAHYMENA THERMOPHILA | |
| 19 | BG, HE, NC, S (AX, DX, FX, HX) | RPL18A | polymer | 189 | 22018.8 | 4 | UniProt (P0DJ18) Pfam (PF01775) | TETRAHYMENA THERMOPHILA | |
| 20 | IE, OC, T, UA (B2, C2, E2, G2) | 5.8S RRNA | polymer | 154 | 49800.6 | 4 | GenBank (JN547815) | TETRAHYMENA THERMOPHILA | |
| 21 | JE, PC, U, VA (B3, C3, E3, G3) | 5S RRNA | polymer | 120 | 38741.0 | 4 | GenBank (J01893) | TETRAHYMENA THERMOPHILA | |
| 22 | KE, QC, V, WA (BA, CA, EA, GA) | RPL8 | polymer | 264 | 28707.0 | 4 | UniProt (P0DJ52) Pfam (PF00181) Pfam (PF03947) | TETRAHYMENA THERMOPHILA | |
| 23 | LE, RC, W, XA (BB, CB, EB, GB) | RIBOSOMAL PROTEIN L3 | polymer | 391 | 44348.5 | 4 | UniProt (O96774) Pfam (PF00297) | TETRAHYMENA THERMOPHILA | RPL3 |
| 24 | ME, SC, X, YA (BC, CC, EC, GC) | RPL4 | polymer | 410 | 45190.8 | 4 | UniProt (P0DJ55) Pfam (PF00573) Pfam (PF14374) | TETRAHYMENA THERMOPHILA | |
| 25 | NE, TC, Y, ZA (BD, CD, ED, GD) | 60S RIBOSOMAL PROTEIN L11 | polymer | 172 | 19755.0 | 4 | UniProt (P24119) Pfam (PF00281) Pfam (PF00673) | TETRAHYMENA THERMOPHILA | L21, RPL11 |
| 26 | AB, OE, UC, Z (BE, CE, EE, GE) | 60S RIBOSOMAL PROTEIN L9 | polymer | 188 | 21373.0 | 4 | UniProt (Q22AX5) Pfam (PF00347) | TETRAHYMENA THERMOPHILA | RPL9 |
| 27 | AA, BB, PE, VC (BF, CF, EF, GF) | RPL7A | polymer | 255 | 29129.4 | 4 | UniProt (P0DJ14) Pfam (PF01248) | TETRAHYMENA THERMOPHILA | |
| 28 | BA, CB, QE, WC (BG, CG, EG, GG) | RPLP0 | polymer | 123 | 10485.9 | 4 | TETRAHYMENA THERMOPHILA | ||
| 29 | CA, DB, RE, XC (BH, CH, EH, GH) | 60S RIBOSOMAL PROTEIN L10 | polymer | 215 | 24511.8 | 4 | UniProt (Q235M8) Pfam (PF00252) | TETRAHYMENA THERMOPHILA | RPL10 |
| 30 | DA, EB, SE, YC (BI, CI, EI, GI) | 60S RIBOSOMAL PROTEIN L13A | polymer | 198 | 22641.8 | 4 | UniProt (P0DJ15) Pfam (PF00572) | TETRAHYMENA THERMOPHILA | RPL13A |
| 31 | EA, FB, TE, ZC (BJ, CJ, EJ, GJ) | RPL23 | polymer | 141 | 14903.5 | 4 | UniProt (P0DJ53) Pfam (PF00238) | TETRAHYMENA THERMOPHILA | |
| 32 | AD, FA, GB, UE (BK, CK, EK, GK) | 60S RIBOSOMAL PROTEIN L27A | polymer | 149 | 16662.9 | 4 | UniProt (Q00454) Pfam (PF00828) | TETRAHYMENA THERMOPHILA | L29, RPL27A |
| 33 | BD, GA, HB, VE (BL, CL, EL, GL) | RIBOSOMAL PROTEIN L15 | polymer | 204 | 24134.2 | 4 | UniProt (Q22A30) Pfam (PF00827) | TETRAHYMENA THERMOPHILA | RPL15 |
| 34 | CD, HA, IB, WE (BM, CM, EM, GM) | 60S RIBOSOMAL PROTEIN L5 | polymer | 301 | 34525.9 | 4 | UniProt (Q231U7) Pfam (PF17144) Pfam (PF14204) | TETRAHYMENA THERMOPHILA | RPL5 |
| 35 | DD, IA, JB, XE (BN, CN, EN, GN) | RPL18 | polymer | 181 | 20632.2 | 4 | UniProt (P0DJ17) Pfam (PF17135) | TETRAHYMENA THERMOPHILA | |
| 36 | ED, JA, YE (BO, EO, GO) | RPL19 | polymer | 185 | 21429.4 | 3 | UniProt (P0DJ60) Pfam (PF01280) | TETRAHYMENA THERMOPHILA | |
| 37 | FD, KA, LB, ZE (BP, CP, EP, GP) | 60S RIBOSOMAL PROTEIN L21 | polymer | 157 | 18164.1 | 4 | UniProt (Q23TC8) Pfam (PF01157) | TETRAHYMENA THERMOPHILA | RPL21 |
| 38 | AF, GD, LA, MB (BQ, CQ, EQ, GQ) | RPL17 | polymer | 183 | 20417.7 | 4 | UniProt (P0DJ16) Pfam (PF00237) | TETRAHYMENA THERMOPHILA | |
| 39 | BF, HD, MA, NB (BR, CR, ER, GR) | RPL23A | polymer | 150 | 16897.7 | 4 | UniProt (P0DJ57) Pfam (PF03939) Pfam (PF00276) | TETRAHYMENA THERMOPHILA | |
| 40 | CF, ID, NA, OB (BS, CS, ES, GS) | RPL26 | polymer | 135 | 15421.3 | 4 | UniProt (Q23F79) Pfam (PF16906) Pfam (PF00467) | TETRAHYMENA THERMOPHILA | |
| 41 | DF, JD, OA, PB (BT, CT, ET, GT) | RPL24 | polymer | 158 | 18104.7 | 4 | UniProt (P0DJ54) Pfam (PF01246) | TETRAHYMENA THERMOPHILA | |
| 42 | EF, KD, PA, QB (BU, CU, EU, GU) | RPL35 | polymer | 124 | 14231.1 | 4 | UniProt (P0DJ51) Pfam (PF00831) | TETRAHYMENA THERMOPHILA | |
| 43 | FF, LD, QA, RB (BV, CV, EV, GV) | 60S RIBOSOMAL PROTEIN L7 | polymer | 239 | 27670.3 | 4 | UniProt (P0DJ13) Pfam (PF08079) Pfam (PF00327) | TETRAHYMENA THERMOPHILA | RPL7 |
| 44 | GF, MD, RA, SB (BW, CW, EW, GW) | 60S RIBOSOMAL PROTEIN L31 | polymer | 111 | 12990.1 | 4 | UniProt (Q22DH9) Pfam (PF01198) | TETRAHYMENA THERMOPHILA | RPL31 |
| 45 | HF, ND, SA, TB (BX, CX, EX, GX) | 60S RIBOSOMAL PROTEIN L32 | polymer | 134 | 15347.1 | 4 | UniProt (Q236T0) Pfam (PF01655) | TETRAHYMENA THERMOPHILA | RPL32 |
| 46 | IF, OD, TA, UB (BY, CY, EY, GY) | RPL37A | polymer | 103 | 11375.6 | 4 | UniProt (Q23G98) Pfam (PF01780) | TETRAHYMENA THERMOPHILA | |
| 47 | KB (CO) | RPL19 | polymer | 185 | 20387.4 | 1 | UniProt (P0DJ60) Pfam (PF01280) | TETRAHYMENA THERMOPHILA | |
| 48 | AAA, ABA, ACA, ADA, AEA... (F1, A1, FK, H1, C3...) | MAGNESIUM ION | non-polymer | 24.3 | 865 | Chemie (MG) | |||
| 49 | AO, AOA, BHA, BOA, CHA... (AL, HK, FK, HL, FL...) | ZINC ION | non-polymer | 65.4 | 20 | Chemie (ZN) | |||
| 50 | APA, AQA, ARA, ASA, BPA... (BQ, CY, EW, GP, BU...) | water | water | 18.0 | 5190 | Chemie (HOH) |
Sequence modifications
AJ, DJ, FJ, HJ: 1 - 245 (UniProt: Q245F2)
| PDB | External Database | Details |
|---|---|---|
| Gly -2 | - | expression tag |
| Thr -1 | - | expression tag |
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 184 |
| Total formula weight | 7953462.7 | |
| Non-Polymers* | Number of molecules | 885 |
| Total formula weight | 22332.0 | |
| All* | Total formula weight | 7975794.7 |
