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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V8O

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA16S RRNApolymer1522493958.31GenBank (55979969)THERMUS THERMOPHILUS
2AB30S RIBOSOMAL PROTEIN S2polymer25629317.71UniProt (P80371)
Pfam (PF00318)
In PDB		THERMUS THERMOPHILUS
3AC30S RIBOSOMAL PROTEIN S3polymer23926751.11UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		THERMUS THERMOPHILUS
4AD30S RIBOSOMAL PROTEIN S4polymer20924373.41UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		THERMUS THERMOPHILUS
5AE30S RIBOSOMAL PROTEIN S5polymer16217583.41UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		THERMUS THERMOPHILUS
6AF30S RIBOSOMAL PROTEIN S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		THERMUS THERMOPHILUS
7AG30S RIBOSOMAL PROTEIN S7polymer15618051.01UniProt (P17291)
Pfam (PF00177)
In PDB		THERMUS THERMOPHILUS
8AH30S RIBOSOMAL PROTEIN S8polymer13815868.61UniProt (Q5SHQ2)
In PDB		THERMUS THERMOPHILUS
9AI30S RIBOSOMAL PROTEIN S9polymer12814429.71UniProt (P80374)
Pfam (PF00380)
In PDB		THERMUS THERMOPHILUS
10AJ30S RIBOSOMAL PROTEIN S10polymer10511955.01UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		THERMUS THERMOPHILUS
11AK30S RIBOSOMAL PROTEIN S11polymer12913737.91UniProt (P80376)
Pfam (PF00411)
In PDB		THERMUS THERMOPHILUS
12AL30S RIBOSOMAL PROTEIN S12polymer13514920.81UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		THERMUS THERMOPHILUS
13AM30S RIBOSOMAL PROTEIN S13polymer12614338.91UniProt (P80377)
Pfam (PF00416)
In PDB		THERMUS THERMOPHILUS
14AN30S RIBOSOMAL PROTEIN S14 TYPE Zpolymer617158.71UniProt (Q5SHQ1)
In PDB		THERMUS THERMOPHILUS
15AO30S RIBOSOMAL PROTEIN S15polymer8910578.41UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		THERMUS THERMOPHILUS
16AP30S RIBOSOMAL PROTEIN S16polymer8810410.01UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		THERMUS THERMOPHILUS
17AQ30S RIBOSOMAL PROTEIN S17polymer10512325.71UniProt (Q5SHP7)
In PDB		THERMUS THERMOPHILUS
18AR30S RIBOSOMAL PROTEIN S18polymer8810258.31UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		THERMUS THERMOPHILUS
19AS30S RIBOSOMAL PROTEIN S19polymer9310605.51UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		THERMUS THERMOPHILUS
20AT30S RIBOSOMAL PROTEIN S20polymer10611736.11UniProt (P80380)
Pfam (PF01649)
In PDB		THERMUS THERMOPHILUS
21AU30S RIBOSOMAL PROTEIN THXpolymer273350.01UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		THERMUS THERMOPHILUS
22AVPE HYBRID STATE TRNA FMETpolymer7724802.81ESCHERICHIA COLI
23AXMRNA 5'-R(*AP*AP*AP*AP*AP*AP*UP*GP*UP)-3'polymer92887.81ESCHERICHIA COLI
24AYPEPTIDE CHAIN RELEASE FACTOR 3polymer52959651.91UniProt (B1XFI4)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF16658)
In PDB		ESCHERICHIA COLIRELEASE FACTOR 3, RF-3
25B050S RIBOSOMAL PROTEIN L27polymer859529.11UniProt (P60493)
Pfam (PF01016)
In PDB		THERMUS THERMOPHILUS
26B150S RIBOSOMAL PROTEIN L28polymer9811004.21UniProt (P60494)
Pfam (PF00830)
In PDB		THERMUS THERMOPHILUS
27B250S RIBOSOMAL PROTEIN L29polymer728670.31UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		THERMUS THERMOPHILUS
28B350S RIBOSOMAL PROTEIN L30polymer606799.11UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		THERMUS THERMOPHILUS
29B450S RIBOSOMAL PROTEIN L31polymer718300.51UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		THERMUS THERMOPHILUS
30B550S RIBOSOMAL PROTEIN L32polymer606722.11UniProt (P80339)
Pfam (PF01783)
In PDB		THERMUS THERMOPHILUS
31B650S RIBOSOMAL PROTEIN L33polymer546632.91UniProt (P35871)
Pfam (PF00471)
In PDB		THERMUS THERMOPHILUS
32B750S RIBOSOMAL PROTEIN L34polymer496132.41UniProt (P80340)
Pfam (PF00468)
In PDB		THERMUS THERMOPHILUS
33B850S RIBOSOMAL PROTEIN L35polymer657506.21UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		THERMUS THERMOPHILUS
34B950S RIBOSOMAL PROTEIN L36polymer374435.41UniProt (Q5SHR2)
Pfam (PF00444)
In PDB		THERMUS THERMOPHILUSRIBOSOMAL PROTEIN B
35BA23S RIBOSOMAL RNApolymer2915947975.51GenBank (55979969)THERMUS THERMOPHILUS
36BB5S RIBOSOMAL RNApolymer12239540.61GenBank (55979969)THERMUS THERMOPHILUS
37BC50S RIBOSOMAL PROTEIN L1polymer22924885.71UniProt (Q5SLP7)
Pfam (PF00687)
In PDB		THERMUS THERMOPHILUS
38BD50S RIBOSOMAL PROTEIN L2polymer27630532.61UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		THERMUS THERMOPHILUS
39BE50S RIBOSOMAL PROTEIN L3polymer20622450.21UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		THERMUS THERMOPHILUS
40BF50S RIBOSOMAL PROTEIN L4polymer21023271.91UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		THERMUS THERMOPHILUS
41BG50S RIBOSOMAL PROTEIN L5polymer18221061.61UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		THERMUS THERMOPHILUS
42BH50S RIBOSOMAL PROTEIN L6polymer18019568.91UniProt (Q5SHQ3)
In PDB		THERMUS THERMOPHILUS
43BJ50S RIBOSOMAL PROTEIN L10polymer17314769.21THERMUS THERMOPHILUS
44BK50S RIBOSOMAL PROTEIN L11polymer14712528.41THERMUS THERMOPHILUS
45BN50S RIBOSOMAL PROTEIN L13polymer14015927.91UniProt (P60488)
Pfam (PF00572)
In PDB		THERMUS THERMOPHILUS
46BO50S RIBOSOMAL PROTEIN L14polymer12213323.61UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		THERMUS THERMOPHILUS
47BP50S RIBOSOMAL PROTEIN L15polymer15016319.11UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		THERMUS THERMOPHILUS
48BQ50S RIBOSOMAL PROTEIN L16polymer14115993.91UniProt (P60489)
Pfam (PF00252)
In PDB		THERMUS THERMOPHILUS
49BR50S RIBOSOMAL PROTEIN L17polymer11813750.11UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		THERMUS THERMOPHILUS
50BS50S RIBOSOMAL PROTEIN L18polymer11212639.81UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		THERMUS THERMOPHILUSTL24
51BT50S RIBOSOMAL PROTEIN L19polymer14617188.81UniProt (P60490)
Pfam (PF01245)
In PDB		THERMUS THERMOPHILUS
52BU50S RIBOSOMAL PROTEIN L20polymer11813779.31UniProt (P60491)
Pfam (PF00453)
In PDB		THERMUS THERMOPHILUS
53BV50S RIBOSOMAL PROTEIN L21polymer10111069.21UniProt (P60492)
Pfam (PF00829)
In PDB		THERMUS THERMOPHILUS
54BW50S RIBOSOMAL PROTEIN L22polymer11312808.11UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		THERMUS THERMOPHILUS
55BX50S RIBOSOMAL PROTEIN L23polymer9610759.81UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		THERMUS THERMOPHILUSL*23
56BY50S RIBOSOMAL PROTEIN L24polymer11012085.61UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		THERMUS THERMOPHILUS
57BZ50S RIBOSOMAL PROTEIN L25polymer20623238.61UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		THERMUS THERMOPHILUSTL5
58AYPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
Sequence modifications
AI: 1 - 128 (UniProt: P80374)
PDBExternal DatabaseDetails
Arg 58His 58conflict
AL: 5 - 135 (UniProt: Q5SHN3)
PDBExternal DatabaseDetails
Met 1-expression tag
Val 2-expression tag
Ala 3-expression tag
Leu 4-expression tag
BC: 0 - 228 (UniProt: Q5SLP7)
PDBExternal DatabaseDetails
Ile 19Val 20conflict
His 27Arg 28conflict
Met 127Leu 128conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains57
Total formula weight2292240.3
Non-Polymers*Number of molecules1
Total formula weight521.2
All*Total formula weight2292761.5
*Water molecules are not included.

218500

PDB entries from 2024-04-17

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