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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V84

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, CAribosomal RNA 16Spolymer1506489042.62GenBank (46197919)Thermus thermophilus HB27
2AB, CB30S ribosomal protein S2polymer23426987.32UniProt (P62662)
Pfam (PF00318)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
3AC, CC30S ribosomal protein S3polymer20622862.42UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
4AD, CD30S ribosomal protein S4polymer20824242.32UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
5AE, CE30S ribosomal protein S5polymer15116460.22UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
6AF, CF30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
7AG, CG30S ribosomal protein S7polymer15517919.82UniProt (P62667)
Pfam (PF00177)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
8AH, CH30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
9AI, CI30S ribosomal protein S9polymer12714298.52UniProt (P62669)
Pfam (PF00380)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
10AJ, CJ30S ribosomal protein S10polymer9811299.22UniProt (P62653)
Pfam (PF00338)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
11AK, CK30S ribosomal protein S11polymer11912606.42UniProt (P62654)
Pfam (PF00411)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
12AL, CL30S ribosomal protein S12polymer12413804.32UniProt (P61941)
Pfam (PF00164)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
13AM, CM30S ribosomal protein S13polymer11613237.42UniProt (P62655)
Pfam (PF00416)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
14AN, CN30S ribosomal protein S14 type Zpolymer607027.52UniProt (P62656)
Pfam (PF00253)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
15AO, CO30S ribosomal protein S15polymer8810447.22UniProt (P62657)
Pfam (PF00312)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
16AP, CP30S ribosomal protein S16polymer839924.52UniProt (P62238)
Pfam (PF00886)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
17AQ, CQ30S ribosomal protein S17polymer9911721.92UniProt (P62658)
Pfam (PF00366)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
18AR, CR30S ribosomal protein S18polymer708155.82UniProt (P62659)
Pfam (PF01084)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
19AS, CS30S ribosomal protein S19polymer788949.42UniProt (P62660)
Pfam (PF00203)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
20AT, CT30S ribosomal protein S20polymer9910907.12UniProt (P62661)
Pfam (PF01649)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
21AU, CU30S ribosomal protein Thxpolymer242960.52UniProt (P62613)
Pfam (PF17070)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
22AV, CVRNA (34-MER)polymer4313788.22Thermus thermophilus
23BA, DA23S ribosomal RNApolymer2879936302.12GenBank (46197919)Thermus thermophilus HB27
24BB, DB5S ribosomal RNApolymer11938553.02GenBank (46197919)Thermus thermophilus HB27
25BC, DC50S ribosomal protein L2polymer27129828.62UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
26BD, DD50S ribosomal protein L3polymer20422250.02UniProt (Q72I04)
Pfam (PF00297)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
27BE, DE50S ribosomal protein L4polymer20222487.02UniProt (Q72I05)
Pfam (PF00573)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
28BF, DF50S ribosomal protein L5polymer18120944.42UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
29BG, DG50S ribosomal protein L6polymer15917363.12UniProt (Q72I19)
Pfam (PF00347)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
30BH, DH50S ribosomal protein L9polymer14516107.92UniProt (Q72GV5)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
31BI, DI50S ribosomal protein L10polymer657330.52UniProt (Q72GS1)
Pfam (PF00466)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
32BJ, DJ50S ribosomal protein L13polymer13715568.52UniProt (Q72IN1)
Pfam (PF00572)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
33BK, DK50S ribosomal protein L14polymer12213309.62UniProt (Q72I14)
Pfam (PF00238)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
34BL, DL50S ribosomal protein L15polymer14615858.52UniProt (Q72I23)
Pfam (PF00828)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
35BM, DM50S ribosomal protein L16polymer13615348.02UniProt (Q72I11)
Pfam (PF00252)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
36BN, DN50S ribosomal protein L17polymer11713619.02UniProt (Q72I33)
Pfam (PF01196)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
37BO, DO50S ribosomal protein L18polymer9810941.92UniProt (Q72I20)
Pfam (PF00861)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
38BP, DP50S ribosomal protein L19polymer13716247.92UniProt (Q72JU9)
Pfam (PF01245)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
39BQ, DQ50S ribosomal protein L20polymer11613500.92UniProt (Q72L76)
Pfam (PF00453)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
40BR, DR50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
41BS, DS50S ribosomal protein L22polymer11212678.92UniProt (Q72I09)
Pfam (PF00237)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
42BT, DT50S ribosomal protein L23polymer9210273.12UniProt (Q72I06)
Pfam (PF00276)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
43BU, DU50S ribosomal protein L24polymer10011078.52UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
44BV, DV50S ribosomal protein L25polymer18821150.32UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)General stress protein CTC
45BW, DW50S ribosomal protein L27polymer768587.92UniProt (Q72HR3)
Pfam (PF01016)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
46BX, DX50S ribosomal protein L28polymer889884.72UniProt (Q72G84)
Pfam (PF00830)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
47BY, DY50S ribosomal protein L29polymer627457.92UniProt (Q72I12)
Pfam (PF00831)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
48BZ, DZ50S ribosomal protein L30polymer596670.02UniProt (Q72I22)
Pfam (PF00327)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
49B1, D150S ribosomal protein L31polymer303278.92UniProt (Q72JR0)
Pfam (PF01197)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
50B2, D250S ribosomal protein L32polymer525818.92UniProt (P62652)
Pfam (PF01783)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
51B3, D350S ribosomal protein L33polymer445473.42UniProt (Q72GW3)
Pfam (PF00471)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
52B4, D450S ribosomal protein L34polymer485975.32UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
53B5, D550S ribosomal protein L35polymer637245.92UniProt (Q72L77)
Pfam (PF01632)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
54B2, CA, AA, DA, BA...MAGNESIUM IONnon-polymer24.31194Chemie (MG)
55AD, CD, AN, CNZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
BA, DA: 6 - 2897 (GenBank: 46197919)
PDBExternal DatabaseDetails
U 1142C 1535654conflict
U 2825G 1537301conflict
BQ, DQ: 2 - 118 (UniProt: Q72L76)
PDBExternal DatabaseDetails
-Phe 32deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains106
Total formula weight4253406.8
Non-Polymers*Number of molecules1198
Total formula weight29281.8
All*Total formula weight4282688.6
*Water molecules are not included.

221716

PDB entries from 2024-06-26

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