4V84
Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, BB (AA, CA) | ribosomal RNA 16S | polymer | 1506 | 489042.6 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
| 2 | B, CB (AB, CB) | 30S ribosomal protein S2 | polymer | 234 | 26987.3 | 2 | UniProt (P62662) Pfam (PF00318) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 3 | C, DB (AC, CC) | 30S ribosomal protein S3 | polymer | 206 | 22862.4 | 2 | UniProt (P62663) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 4 | D, EB (AD, CD) | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 2 | UniProt (P62664) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 5 | E, FB (AE, CE) | 30S ribosomal protein S5 | polymer | 151 | 16460.2 | 2 | UniProt (P62665) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 6 | F, GB (AF, CF) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (P62666) Pfam (PF01250) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 7 | G, HB (AG, CG) | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 2 | UniProt (P62667) Pfam (PF00177) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 8 | H, IB (AH, CH) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (P62668) Pfam (PF00410) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 9 | I, JB (AI, CI) | 30S ribosomal protein S9 | polymer | 127 | 14298.5 | 2 | UniProt (P62669) Pfam (PF00380) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 10 | J, KB (AJ, CJ) | 30S ribosomal protein S10 | polymer | 98 | 11299.2 | 2 | UniProt (P62653) Pfam (PF00338) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 11 | K, LB (AK, CK) | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 2 | UniProt (P62654) Pfam (PF00411) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 12 | L, MB (AL, CL) | 30S ribosomal protein S12 | polymer | 124 | 13804.3 | 2 | UniProt (P61941) Pfam (PF00164) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 13 | M, NB (AM, CM) | 30S ribosomal protein S13 | polymer | 116 | 13237.4 | 2 | UniProt (P62655) Pfam (PF00416) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 14 | N, OB (AN, CN) | 30S ribosomal protein S14 type Z | polymer | 60 | 7027.5 | 2 | UniProt (P62656) Pfam (PF00253) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 15 | O, PB (AO, CO) | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 2 | UniProt (P62657) Pfam (PF00312) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 16 | P, QB (AP, CP) | 30S ribosomal protein S16 | polymer | 83 | 9924.5 | 2 | UniProt (P62238) Pfam (PF00886) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 17 | Q, RB (AQ, CQ) | 30S ribosomal protein S17 | polymer | 99 | 11721.9 | 2 | UniProt (P62658) Pfam (PF00366) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 18 | R, SB (AR, CR) | 30S ribosomal protein S18 | polymer | 70 | 8155.8 | 2 | UniProt (P62659) Pfam (PF01084) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 19 | S, TB (AS, CS) | 30S ribosomal protein S19 | polymer | 78 | 8949.4 | 2 | UniProt (P62660) Pfam (PF00203) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 20 | T, UB (AT, CT) | 30S ribosomal protein S20 | polymer | 99 | 10907.1 | 2 | UniProt (P62661) Pfam (PF01649) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 21 | U, VB (AU, CU) | 30S ribosomal protein Thx | polymer | 24 | 2960.5 | 2 | UniProt (P62613) Pfam (PF17070) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 22 | V, WB (AV, CV) | RNA (34-MER) | polymer | 43 | 13788.2 | 2 | Thermus thermophilus | ||
| 23 | W, XB (BA, DA) | 23S ribosomal RNA | polymer | 2879 | 936302.1 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
| 24 | X, YB (BB, DB) | 5S ribosomal RNA | polymer | 119 | 38553.0 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
| 25 | Y, ZB (BC, DC) | 50S ribosomal protein L2 | polymer | 271 | 29828.6 | 2 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 26 | AC, Z (BD, DD) | 50S ribosomal protein L3 | polymer | 204 | 22250.0 | 2 | UniProt (Q72I04) Pfam (PF00297) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 27 | AA, BC (BE, DE) | 50S ribosomal protein L4 | polymer | 202 | 22487.0 | 2 | UniProt (Q72I05) Pfam (PF00573) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 28 | BA, CC (BF, DF) | 50S ribosomal protein L5 | polymer | 181 | 20944.4 | 2 | UniProt (Q72I16) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 29 | CA, DC (BG, DG) | 50S ribosomal protein L6 | polymer | 159 | 17363.1 | 2 | UniProt (Q72I19) Pfam (PF00347) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 30 | DA, EC (BH, DH) | 50S ribosomal protein L9 | polymer | 145 | 16107.9 | 2 | UniProt (Q72GV5) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 31 | EA, FC (BI, DI) | 50S ribosomal protein L10 | polymer | 65 | 7330.5 | 2 | UniProt (Q72GS1) Pfam (PF00466) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 32 | FA, GC (BJ, DJ) | 50S ribosomal protein L13 | polymer | 137 | 15568.5 | 2 | UniProt (Q72IN1) Pfam (PF00572) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 33 | GA, HC (BK, DK) | 50S ribosomal protein L14 | polymer | 122 | 13309.6 | 2 | UniProt (Q72I14) Pfam (PF00238) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 34 | HA, IC (BL, DL) | 50S ribosomal protein L15 | polymer | 146 | 15858.5 | 2 | UniProt (Q72I23) Pfam (PF00828) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 35 | IA, JC (BM, DM) | 50S ribosomal protein L16 | polymer | 136 | 15348.0 | 2 | UniProt (Q72I11) Pfam (PF00252) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 36 | JA, KC (BN, DN) | 50S ribosomal protein L17 | polymer | 117 | 13619.0 | 2 | UniProt (Q72I33) Pfam (PF01196) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 37 | KA, LC (BO, DO) | 50S ribosomal protein L18 | polymer | 98 | 10941.9 | 2 | UniProt (Q72I20) Pfam (PF00861) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 38 | LA, MC (BP, DP) | 50S ribosomal protein L19 | polymer | 137 | 16247.9 | 2 | UniProt (Q72JU9) Pfam (PF01245) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 39 | MA, NC (BQ, DQ) | 50S ribosomal protein L20 | polymer | 116 | 13500.9 | 2 | UniProt (Q72L76) Pfam (PF00453) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 40 | NA, OC (BR, DR) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (Q72HR2) Pfam (PF00829) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 41 | OA, PC (BS, DS) | 50S ribosomal protein L22 | polymer | 112 | 12678.9 | 2 | UniProt (Q72I09) Pfam (PF00237) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 42 | PA, QC (BT, DT) | 50S ribosomal protein L23 | polymer | 92 | 10273.1 | 2 | UniProt (Q72I06) Pfam (PF00276) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 43 | QA, RC (BU, DU) | 50S ribosomal protein L24 | polymer | 100 | 11078.5 | 2 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 44 | RA, SC (BV, DV) | 50S ribosomal protein L25 | polymer | 188 | 21150.3 | 2 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | General stress protein CTC |
| 45 | SA, TC (BW, DW) | 50S ribosomal protein L27 | polymer | 76 | 8587.9 | 2 | UniProt (Q72HR3) Pfam (PF01016) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 46 | TA, UC (BX, DX) | 50S ribosomal protein L28 | polymer | 88 | 9884.7 | 2 | UniProt (Q72G84) Pfam (PF00830) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 47 | UA, VC (BY, DY) | 50S ribosomal protein L29 | polymer | 62 | 7457.9 | 2 | UniProt (Q72I12) Pfam (PF00831) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 48 | VA, WC (BZ, DZ) | 50S ribosomal protein L30 | polymer | 59 | 6670.0 | 2 | UniProt (Q72I22) Pfam (PF00327) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 49 | WA, XC (B1, D1) | 50S ribosomal protein L31 | polymer | 30 | 3278.9 | 2 | UniProt (Q72JR0) Pfam (PF01197) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 50 | XA, YC (B2, D2) | 50S ribosomal protein L32 | polymer | 52 | 5818.9 | 2 | UniProt (P62652) Pfam (PF01783) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 51 | YA, ZC (B3, D3) | 50S ribosomal protein L33 | polymer | 44 | 5473.4 | 2 | UniProt (Q72GW3) Pfam (PF00471) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 52 | AD, ZA (B4, D4) | 50S ribosomal protein L34 | polymer | 48 | 5975.3 | 2 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 53 | AB, BD (B5, D5) | 50S ribosomal protein L35 | polymer | 63 | 7245.9 | 2 | UniProt (Q72L77) Pfam (PF01632) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 54 | AAA, ABA, ACA, ADA, AE... (B2, CA, AA, DA, BA...) | MAGNESIUM ION | non-polymer | 24.3 | 1194 | Chemie (MG) | |||
| 55 | JJ, LFA, LJ, MFA (AD, CD, AN, CN) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) |
Sequence modifications
BA, DA: 6 - 2897 (GenBank: 46197919)
BQ, DQ: 2 - 118 (UniProt: Q72L76)
| PDB | External Database | Details |
|---|---|---|
| U 1142 | C 1535654 | conflict |
| U 2825 | G 1537301 | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | Phe 32 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 106 |
| Total formula weight | 4253406.8 | |
| Non-Polymers* | Number of molecules | 1198 |
| Total formula weight | 29281.8 | |
| All* | Total formula weight | 4282688.6 |
