4V7U
Crystal structure of the E. coli ribosome bound to erythromycin.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, AB (AA, CA) | 16S rRNA | polymer | 1533 | 496892.4 | 2 | GenBank (AP009048.1) | Escherichia coli | |
| 2 | B, BB (AB, CB) | 30S ribosomal protein S2 | polymer | 218 | 24253.9 | 2 | UniProt (P0A7V0) Pfam (PF00318) | Escherichia coli | |
| 3 | C, CB (AC, CC) | 30S ribosomal protein S3 | polymer | 206 | 23078.8 | 2 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) | Escherichia coli | |
| 4 | D, DB (AD, CD) | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 2 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) | Escherichia coli | |
| 5 | E, EB (AE, CE) | 30S ribosomal protein S5 | polymer | 150 | 15804.3 | 2 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) | Escherichia coli | |
| 6 | F, FB (AF, CF) | 30S ribosomal protein S6 | polymer | 100 | 11669.4 | 2 | UniProt (P02358) Pfam (PF01250) | Escherichia coli | |
| 7 | G, GB (AG, CG) | 30S ribosomal protein S7 | polymer | 151 | 16861.5 | 2 | UniProt (P02359) Pfam (PF00177) | Escherichia coli | |
| 8 | H, HB (AH, CH) | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 2 | UniProt (P0A7W7) Pfam (PF00410) | Escherichia coli | |
| 9 | I, IB (AI, CI) | 30S ribosomal protein S9 | polymer | 127 | 14554.9 | 2 | UniProt (P0A7X3) Pfam (PF00380) | Escherichia coli | |
| 10 | J, JB (AJ, CJ) | 30S ribosomal protein S10 | polymer | 98 | 11197.0 | 2 | UniProt (P0A7R5) Pfam (PF00338) | Escherichia coli | |
| 11 | K, KB (AK, CK) | 30S ribosomal protein S11 | polymer | 117 | 12487.2 | 2 | UniProt (P0A7R9) Pfam (PF00411) | Escherichia coli | |
| 12 | L, LB (AL, CL) | 30S ribosomal protein S12 | polymer | 123 | 13637.0 | 2 | UniProt (P0A7S3) Pfam (PF00164) | Escherichia coli | |
| 13 | M, MB (AM, CM) | 30S ribosomal protein S13 | polymer | 114 | 12625.8 | 2 | UniProt (P0A7S9) Pfam (PF00416) | Escherichia coli | |
| 14 | N, NB (AN, CN) | 30S ribosomal protein S14 | polymer | 100 | 11475.4 | 2 | UniProt (P0AG59) Pfam (PF00253) | Escherichia coli | |
| 15 | O, OB (AO, CO) | 30S ribosomal protein S15 | polymer | 88 | 10159.6 | 2 | UniProt (P0ADZ4) Pfam (PF00312) | Escherichia coli | |
| 16 | P, PB (AP, CP) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 2 | UniProt (P0A7T3) Pfam (PF00886) | Escherichia coli | |
| 17 | Q, QB (AQ, CQ) | 30S ribosomal protein S17 | polymer | 80 | 9263.9 | 2 | UniProt (P0AG63) Pfam (PF00366) | Escherichia coli | |
| 18 | R, RB (AR, CR) | 30S ribosomal protein S18 | polymer | 55 | 6466.5 | 2 | UniProt (P0A7T7) Pfam (PF01084) | Escherichia coli | |
| 19 | S, SB (AS, CS) | 30S ribosomal protein S19 | polymer | 79 | 9057.6 | 2 | UniProt (P0A7U3) Pfam (PF00203) | Escherichia coli | |
| 20 | T, TB (AT, CT) | 30S ribosomal protein S20 | polymer | 85 | 9506.2 | 2 | UniProt (P0A7U7) Pfam (PF01649) | Escherichia coli | |
| 21 | U, UB (AU, CU) | 30S ribosomal protein S21 | polymer | 51 | 6067.1 | 2 | UniProt (P68679) Pfam (PF01165) | Escherichia coli | |
| 22 | V, VB (BA, DA) | 23S rRNA | polymer | 2904 | 941612.4 | 2 | GenBank (33357927) | Escherichia coli | |
| 23 | W, WB (BB, DB) | 5S rRNA | polymer | 118 | 38177.8 | 2 | GenBank (CP000948.1) | Escherichia coli | |
| 24 | X, XB (BC, DC) | 50S ribosomal protein L2 | polymer | 271 | 29663.2 | 2 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli | |
| 25 | Y, YB (BD, DD) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 2 | UniProt (P60438) Pfam (PF00297) | Escherichia coli | |
| 26 | Z, ZB (BE, DE) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 2 | UniProt (P60723) Pfam (PF00573) | Escherichia coli | |
| 27 | AA, AC (BF, DF) | 50S ribosomal protein L5 | polymer | 178 | 20202.4 | 2 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) | Escherichia coli | |
| 28 | BA, BC (BG, DG) | 50S ribosomal protein L6 | polymer | 176 | 18801.6 | 2 | UniProt (P0AG55) Pfam (PF00347) | Escherichia coli | |
| 29 | CA, CC (BH, DH) | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 2 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) | Escherichia coli | |
| 30 | DA, DC (BI, DI) | 50S ribosomal protein L11 | polymer | 141 | 14763.2 | 2 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) | Escherichia coli | |
| 31 | EA, EC (BJ, DJ) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 2 | UniProt (P0AA10) Pfam (PF00572) | Escherichia coli | |
| 32 | FA, FC (BK, DK) | 50S ribosomal protein L14 | polymer | 122 | 13451.9 | 2 | UniProt (P0ADY3) Pfam (PF00238) | Escherichia coli | |
| 33 | GA, GC (BL, DL) | 50S ribosomal protein L15 | polymer | 143 | 14877.3 | 2 | UniProt (P02413) Pfam (PF00828) | Escherichia coli | |
| 34 | HA, HC (BM, DM) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 2 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli | |
| 35 | IA, IC (BN, DN) | 50S ribosomal protein L17 | polymer | 120 | 13721.9 | 2 | UniProt (P0AG44) Pfam (PF01196) | Escherichia coli | |
| 36 | JA, JC (BO, DO) | 50S ribosomal protein L18 | polymer | 116 | 12663.5 | 2 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli | |
| 37 | KA, KC (BP, DP) | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 2 | UniProt (P0A7K6) Pfam (PF01245) | Escherichia coli | |
| 38 | LA, LC (BQ, DQ) | 50S ribosomal protein L20 | polymer | 117 | 13396.8 | 2 | UniProt (P0A7L3) Pfam (PF00453) | Escherichia coli | |
| 39 | MA, MC (BR, DR) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 2 | UniProt (P0AG48) Pfam (PF00829) | Escherichia coli | |
| 40 | NA, NC (BS, DS) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 2 | UniProt (P61175) Pfam (PF00237) | Escherichia coli | |
| 41 | OA, OC (BT, DT) | 50S ribosomal protein L23 | polymer | 93 | 10546.5 | 2 | UniProt (P0ADZ0) Pfam (PF00276) | Escherichia coli | |
| 42 | PA, PC (BU, DU) | 50S ribosomal protein L24 | polymer | 102 | 11078.9 | 2 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) | Escherichia coli | |
| 43 | QA, QC (BV, DV) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 2 | UniProt (P68919) Pfam (PF01386) | Escherichia coli | |
| 44 | RA, RC (BW, DW) | 50S ribosomal protein L27 | polymer | 79 | 8476.7 | 2 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli | |
| 45 | SA, SC (BX, DX) | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 2 | UniProt (P0A7M2) Pfam (PF00830) | Escherichia coli | |
| 46 | TA, TC (BY, DY) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 2 | UniProt (P0A7M6) Pfam (PF00831) | Escherichia coli | |
| 47 | UA, UC (BZ, DZ) | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 2 | UniProt (P0AG51) Pfam (PF00327) | Escherichia coli | |
| 48 | VA, VC (B0, D0) | 50S ribosomal protein L32 | polymer | 56 | 6332.2 | 2 | UniProt (P0A7N4) Pfam (PF01783) | Escherichia coli | |
| 49 | WA, WC (B1, D1) | 50S ribosomal protein L33 | polymer | 50 | 5814.8 | 2 | UniProt (P0A7N9) Pfam (PF00471) | Escherichia coli | |
| 50 | XA, XC (B2, D2) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 2 | UniProt (P0A7P5) Pfam (PF00468) | Escherichia coli | |
| 51 | YA, YC (B3, D3) | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 2 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli | |
| 52 | ZA, ZC (B4, D4) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 2 | UniProt (P0A7Q6) Pfam (PF00444) | Escherichia coli | |
| 53 | AD, AE, AF, AG, AH... (AA, BA, BB, CA, DA...) | MAGNESIUM ION | non-polymer | 24.3 | 361 | Chemie (MG) PubChem (888) | |||
| 54 | WJ (BA) | ERYTHROMYCIN A | non-polymer | 733.9 | 1 | Chemie (ERY) PubChem (16219331) PubChem (16757675) PubChem (12560) PubChem (22489166) PubChem (22836457) PubChem (22836628) PubChem (23229191) PubChem (24797108) PubChem (16219337) PubChem (16401342) PubChem (16759276) PubChem (18397931) PubChem (18528813) PubChem (21550772) PubChem (22836626) PubChem (44451949) PubChem (45107170) PubChem (45107190) PubChem (45107269) PubChem (45107273) PubChem (44317775) PubChem (44547821) PubChem (44563509) PubChem (49867933) PubChem (51066560) PubChem (45107581) PubChem (53384904) PubChem (53384913) PubChem (57358551) PubChem (50987679) PubChem (57587180) PubChem (53393685) PubChem (54359201) PubChem (59974395) PubChem (60044171) PubChem (60086513) PubChem (57357418) PubChem (66577477) PubChem (57893297) PubChem (58594795) PubChem (58593559) PubChem (59022390) PubChem (59062422) PubChem (59064284) PubChem (59093569) PubChem (59284311) PubChem (59511080) PubChem (59897430) PubChem (59903654) PubChem (60009793) PubChem (60024420) PubChem (66639443) PubChem (66899541) PubChem (71024089) PubChem (177390461) PubChem (177679009) PubChem (6364614) PubChem (3255) PubChem (8233) PubChem (9361) PubChem (6604684) PubChem (6713919) PubChem (154401) PubChem (89970519) PubChem (70897564) PubChem (71306958) PubChem (90472408) PubChem (73265320) PubChem (73456721) PubChem (73946784) PubChem (456593) PubChem (467795) PubChem (489009) PubChem (10034134) PubChem (86820632) PubChem (90473776) PubChem (90746906) PubChem (12358509) PubChem (12358517) PubChem (12966969) PubChem (97293607) PubChem (91434318) PubChem (91558259) PubChem (15986867) PubChem (99719272) PubChem (97293608) PubChem (99719271) PubChem (110189186) PubChem (6540620) PubChem (6602506) PubChem (6604221) PubChem (124226124) PubChem (124518166) PubChem (124604978) PubChem (124605145) PubChem (124605175) PubChem (124723146) PubChem (124798369) PubChem (124762348) PubChem (124822557) PubChem (9833120) PubChem (10032882) PubChem (129009922) PubChem (129125718) PubChem (129445574) PubChem (129445576) PubChem (129666958) PubChem (10897911) PubChem (132274086) PubChem (133126690) PubChem (133126790) PubChem (133550114) PubChem (133688268) PubChem (134081643) PubChem (134081274) PubChem (134693955) PubChem (118725304) PubChem (11970254) PubChem (124226125) PubChem (124523502) PubChem (124604979) PubChem (124605144) PubChem (124605146) PubChem (124716782) PubChem (124716783) PubChem (124723147) PubChem (124762349) PubChem (12358519) PubChem (12358515) PubChem (12358508) PubChem (124822555) PubChem (124822558) PubChem (124870987) PubChem (137705094) PubChem (126969058) PubChem (129010384) PubChem (129119817) PubChem (129445575) PubChem (139247122) PubChem (129627840) PubChem (129628729) PubChem (131665174) PubChem (141945645) PubChem (133562871) PubChem (133602826) PubChem (146158524) PubChem (134081264) PubChem (134693174) PubChem (135026875) PubChem (157254288) PubChem (163003493) PubChem (163003495) PubChem (138113460) PubChem (138403276) PubChem (165844830) PubChem (140886742) PubChem (141646830) PubChem (145774355) PubChem (169440260) PubChem (155899868) PubChem (155900413) PubChem (172897573) PubChem (161123720) PubChem (163003494) PubChem (163003496) PubChem (166604455) PubChem (166639762) PubChem (169289157) PubChem (171114703) PubChem (172897571) PubChem (16212992) PubChem (16213052) | |||
| 55 | BK, ZQ (B4, D4) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 56 | AR, AS, BR, BS, CR... (AA, DC, AE, DD, AL...) | water | water | 18.0 | 1708 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 104 |
| Total formula weight | 4227881.6 | |
| Non-Polymers* | Number of molecules | 364 |
| Total formula weight | 9638.8 | |
| All* | Total formula weight | 4237520.5 |
