4V7K

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	Ab, Bb	30S ribosomal protein S2	polymer	256	29317.7	2	UniProt (P80371) Pfam (PF00318) In PDB	Thermus thermophilus HB8
2	Ac, Bc	30S ribosomal protein S3	polymer	239	26751.1	2	UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB	Thermus thermophilus HB8
3	Ad, Bd	30S ribosomal protein S4	polymer	209	24373.4	2	UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB	Thermus thermophilus HB8
4	Ae, Be	30S ribosomal protein S5	polymer	162	17583.4	2	UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB	Thermus thermophilus HB8
5	Af, Bf	30S ribosomal protein S6	polymer	101	11988.8	2	UniProt (Q5SLP8) Pfam (PF01250) In PDB	Thermus thermophilus HB8	TS9
6	Ag, Bg	30S ribosomal protein S7	polymer	156	18051.0	2	UniProt (P17291) Pfam (PF00177) In PDB	Thermus thermophilus HB8
7	Ah, Bh	30S ribosomal protein S8	polymer	138	15868.6	2	UniProt (Q5SHQ2) In PDB	Thermus thermophilus HB8
8	Ai, Bi	30S ribosomal protein S9	polymer	128	14410.6	2	UniProt (P80374) Pfam (PF00380) In PDB	Thermus thermophilus HB8
9	Aj, Bj	30S ribosomal protein S10	polymer	105	11955.0	2	UniProt (Q5SHN7) Pfam (PF00338) In PDB	Thermus thermophilus HB8
10	Ak, Bk	30S ribosomal protein S11	polymer	129	13737.9	2	UniProt (P80376) Pfam (PF00411) In PDB	Thermus thermophilus HB8
11	Al, Bl	30S ribosomal protein S12	polymer	132	14637.4	2	UniProt (Q5SHN3) Pfam (PF00164) In PDB	Thermus thermophilus HB8
12	Am, Bm	30S ribosomal protein S13	polymer	126	14338.9	2	UniProt (P80377) Pfam (PF00416) In PDB	Thermus thermophilus HB8
13	An, Bn	30S ribosomal protein S14 type Z	polymer	61	7158.7	2	UniProt (Q5SHQ1) In PDB	Thermus thermophilus HB8
14	Ao, Bo	30S ribosomal protein S15	polymer	89	10578.4	2	UniProt (Q5SJ76) Pfam (PF00312) In PDB	Thermus thermophilus HB8
15	Ap, Bp	30S ribosomal protein S16	polymer	88	10410.0	2	UniProt (Q5SJH3) Pfam (PF00886) In PDB	Thermus thermophilus HB8
16	Aq, Bq	30S ribosomal protein S17	polymer	105	12325.7	2	UniProt (Q5SHP7) In PDB	Thermus thermophilus HB8
17	Ar, Br	30S ribosomal protein S18	polymer	88	10258.3	2	UniProt (Q5SLQ0) Pfam (PF01084) In PDB	Thermus thermophilus HB8
18	As, Bs	30S ribosomal protein S19	polymer	93	10605.5	2	UniProt (Q5SHP2) Pfam (PF00203) In PDB	Thermus thermophilus HB8
19	At, Bt	30S ribosomal protein S20	polymer	106	11736.1	2	UniProt (P80380) Pfam (PF01649) In PDB	Thermus thermophilus HB8
20	Au, Bu	30S ribosomal protein Thx	polymer	27	3350.0	2	UniProt (Q5SIH3) Pfam (PF17070) In PDB	Thermus thermophilus HB8	S31
21	Ay, By	Toxin relE	polymer	95	11246.3	2	UniProt (P0C077) Pfam (PF05016) In PDB	Escherichia coli K-12
22	Aa, Ba	RNA (1504-MER)	polymer	1504	488391.2	2		Thermus thermophilus
23	Ax, Bx	RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3')	polymer	14	4564.7	2
24	Av, Bv	RNA (77-MER)	polymer	77	24816.8	2		Thermus thermophilus
25	Aw, Bw	RNA (77-MER)	polymer	77	24802.8	2		Thermus thermophilus
26	AC, BC	50S ribosomal protein L1	polymer	229	24872.7	2	UniProt (Q5SLP7) Pfam (PF00687) In PDB	Thermus thermophilus HB8
27	AD, BD	50S ribosomal protein L2	polymer	276	30532.6	2	UniProt (P60405) Pfam (PF00181) Pfam (PF03947) In PDB	Thermus thermophilus HB8
28	AE, BE	50S ribosomal protein L3	polymer	206	22450.2	2	UniProt (Q5SHN8) Pfam (PF00297) In PDB	Thermus thermophilus HB8
29	AF, BF	50S ribosomal protein L4	polymer	210	23271.9	2	UniProt (Q5SHN9) Pfam (PF00573) In PDB	Thermus thermophilus HB8	L1e
30	AG, BG	50S ribosomal protein L5	polymer	182	21061.6	2	UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) In PDB	Thermus thermophilus HB8
31	AH, BH	50S ribosomal protein L6	polymer	180	19568.9	2	UniProt (Q5SHQ3) In PDB	Thermus thermophilus HB8
32	AI, BI	50S ribosomal protein L9	polymer	148	16422.2	2	UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) In PDB	Thermus thermophilus HB8
33	AJ, BJ	50S ribosomal protein L10	polymer	173	18586.6	2	UniProt (Q8VVE3) Pfam (PF00466) In PDB	Thermus thermophilus HB8
34	AN, BN	50S ribosomal protein L13	polymer	140	15927.9	2	UniProt (P60488) Pfam (PF00572) In PDB	Thermus thermophilus HB8
35	AO, BO	50S ribosomal protein L14	polymer	122	13323.6	2	UniProt (Q5SHP8) Pfam (PF00238) In PDB	Thermus thermophilus HB8
36	AP, BP	50S ribosomal protein L15	polymer	150	16319.1	2	UniProt (Q5SHQ7) Pfam (PF00828) In PDB	Thermus thermophilus HB8
37	AQ, BQ	50S ribosomal protein L16	polymer	141	15993.9	2	UniProt (P60489) Pfam (PF00252) In PDB	Thermus thermophilus HB8
38	AR, BR	50S ribosomal protein L17	polymer	118	13750.1	2	UniProt (Q9Z9H5) Pfam (PF01196) In PDB	Thermus thermophilus HB8
39	AS, BS	50S ribosomal protein L18	polymer	112	12639.8	2	UniProt (Q5SHQ4) Pfam (PF00861) In PDB	Thermus thermophilus HB8	TL24
40	AT, BT	50S ribosomal protein L19	polymer	146	17188.8	2	UniProt (P60490) Pfam (PF01245) In PDB	Thermus thermophilus HB8
41	AU, BU	50S ribosomal protein L20	polymer	118	13779.3	2	UniProt (P60491) Pfam (PF00453) In PDB	Thermus thermophilus HB8
42	AV, BV	50S ribosomal protein L21	polymer	101	11069.2	2	UniProt (P60492) Pfam (PF00829) In PDB	Thermus thermophilus HB8
43	AW, BW	50S ribosomal protein L22	polymer	113	12808.1	2	UniProt (Q5SHP3) Pfam (PF00237) In PDB	Thermus thermophilus HB8
44	AX, BX	50S ribosomal protein L23	polymer	96	10759.8	2	UniProt (Q5SHP0) Pfam (PF00276) In PDB	Thermus thermophilus HB8
45	AY, BY	50S ribosomal protein L24	polymer	110	12085.6	2	UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) In PDB	Thermus thermophilus HB8
46	AZ, BZ	50S ribosomal protein L25	polymer	206	23238.6	2	UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) In PDB	Thermus thermophilus HB8	TL5
47	A0, B0	50S ribosomal protein L27	polymer	85	9529.1	2	UniProt (P60493) Pfam (PF01016) In PDB	Thermus thermophilus HB8
48	A1, B1	50S ribosomal protein L28	polymer	98	11004.2	2	UniProt (P60494) Pfam (PF00830) In PDB	Thermus thermophilus HB8
49	A2, B2	50S ribosomal protein L29	polymer	72	8670.3	2	UniProt (Q5SHP6) Pfam (PF00831) In PDB	Thermus thermophilus HB8
50	A3, B3	50S ribosomal protein L30	polymer	60	6799.1	2	UniProt (Q5SHQ6) Pfam (PF00327) In PDB	Thermus thermophilus HB8
51	A4, B4	50S ribosomal protein L31	polymer	71	8300.5	2	UniProt (Q5SJE1) Pfam (PF01197) In PDB	Thermus thermophilus HB8
52	A5, B5	50S ribosomal protein L32	polymer	60	6722.1	2	UniProt (P80339) Pfam (PF01783) In PDB	Thermus thermophilus HB8
53	A6, B6	50S ribosomal protein L33	polymer	54	6632.9	2	UniProt (P35871) Pfam (PF00471) In PDB	Thermus thermophilus HB8
54	A7, B7	50S ribosomal protein L34	polymer	49	6132.4	2	UniProt (P80340) Pfam (PF00468) In PDB	Thermus thermophilus HB8
55	A8, B8	50S ribosomal protein L35	polymer	65	7506.2	2	UniProt (Q5SKU1) Pfam (PF01632) In PDB	Thermus thermophilus HB8
56	A9, B9	50S ribosomal protein L36	polymer	37	4435.4	2	UniProt (Q5SHR2) Pfam (PF00444) In PDB	Thermus thermophilus HB8	Ribosomal protein B
57	AA, BA	RNA (2848-MER)	polymer	2848	926365.8	2		Thermus thermophilus HB8
58	AB, BB	RNA (119-MER)	polymer	119	38553.0	2		Thermus thermophilus HB8
59	Bd, Bn, B4, Ad, B9...	ZINC ION	non-polymer		65.4	8	Chemie (ZN)
60	Ba, Aa, Bw, BA, AA...	MAGNESIUM ION	non-polymer		24.3	1064	Chemie (MG)

Contents of the asymmetric unit

Polymers	Number of chains	116
	Total formula weight	4499119.4
Non-Polymers*	Number of molecules	1072
	Total formula weight	26383.8
All*	Total formula weight	4525503.1

*Water molecules are not included.