4V7K

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, GB (Ab, Bb)	30S ribosomal protein S2	polymer	256	29317.7	2	UniProt (P80371) Pfam (PF00318)	Thermus thermophilus HB8
2	B, HB (Ac, Bc)	30S ribosomal protein S3	polymer	239	26751.1	2	UniProt (P80372) Pfam (PF07650) Pfam (PF00189)	Thermus thermophilus HB8
3	C, IB (Ad, Bd)	30S ribosomal protein S4	polymer	209	24373.4	2	UniProt (P80373) Pfam (PF00163) Pfam (PF01479)	Thermus thermophilus HB8
4	D, JB (Ae, Be)	30S ribosomal protein S5	polymer	162	17583.4	2	UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719)	Thermus thermophilus HB8
5	E, KB (Af, Bf)	30S ribosomal protein S6	polymer	101	11988.8	2	UniProt (Q5SLP8) Pfam (PF01250)	Thermus thermophilus HB8	TS9
6	F, LB (Ag, Bg)	30S ribosomal protein S7	polymer	156	18051.0	2	UniProt (P17291) Pfam (PF00177)	Thermus thermophilus HB8
7	G, MB (Ah, Bh)	30S ribosomal protein S8	polymer	138	15868.6	2	UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9)	Thermus thermophilus HB8
8	H, NB (Ai, Bi)	30S ribosomal protein S9	polymer	128	14410.6	2	UniProt (P80374) Pfam (PF00380)	Thermus thermophilus HB8
9	I, OB (Aj, Bj)	30S ribosomal protein S10	polymer	105	11955.0	2	UniProt (Q5SHN7) Pfam (PF00338)	Thermus thermophilus HB8
10	J, PB (Ak, Bk)	30S ribosomal protein S11	polymer	129	13737.9	2	UniProt (P80376) Pfam (PF00411)	Thermus thermophilus HB8
11	K, QB (Al, Bl)	30S ribosomal protein S12	polymer	132	14637.4	2	UniProt (Q5SHN3) Pfam (PF00164)	Thermus thermophilus HB8
12	L, RB (Am, Bm)	30S ribosomal protein S13	polymer	126	14338.9	2	UniProt (P80377) Pfam (PF00416)	Thermus thermophilus HB8
13	M, SB (An, Bn)	30S ribosomal protein S14 type Z	polymer	61	7158.7	2	UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6)	Thermus thermophilus HB8
14	N, TB (Ao, Bo)	30S ribosomal protein S15	polymer	89	10578.4	2	UniProt (Q5SJ76) Pfam (PF00312)	Thermus thermophilus HB8
15	O, UB (Ap, Bp)	30S ribosomal protein S16	polymer	88	10410.0	2	UniProt (Q5SJH3) Pfam (PF00886)	Thermus thermophilus HB8
16	P, VB (Aq, Bq)	30S ribosomal protein S17	polymer	105	12325.7	2	UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7)	Thermus thermophilus HB8
17	Q, WB (Ar, Br)	30S ribosomal protein S18	polymer	88	10258.3	2	UniProt (Q5SLQ0) Pfam (PF01084)	Thermus thermophilus HB8
18	R, XB (As, Bs)	30S ribosomal protein S19	polymer	93	10605.5	2	UniProt (Q5SHP2) Pfam (PF00203)	Thermus thermophilus HB8
19	S, YB (At, Bt)	30S ribosomal protein S20	polymer	106	11736.1	2	UniProt (P80380) Pfam (PF01649)	Thermus thermophilus HB8
20	T, ZB (Au, Bu)	30S ribosomal protein Thx	polymer	27	3350.0	2	UniProt (Q5SIH3) Pfam (PF17070)	Thermus thermophilus HB8	S31
21	AC, U (Ay, By)	Toxin relE	polymer	95	11246.3	2	UniProt (P0C077) Pfam (PF05016)	Escherichia coli K-12
22	BC, V (Aa, Ba)	RNA (1504-MER)	polymer	1504	488391.2	2		Thermus thermophilus
23	CC, W (Ax, Bx)	RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3')	polymer	14	4564.7	2
24	DC, X (Av, Bv)	RNA (77-MER)	polymer	77	24816.8	2		Thermus thermophilus
25	EC, Y (Aw, Bw)	RNA (77-MER)	polymer	77	24802.8	2		Thermus thermophilus
26	FC, Z (AC, BC)	50S ribosomal protein L1	polymer	229	24872.7	2	UniProt (Q5SLP7) Pfam (PF00687)	Thermus thermophilus HB8
27	AA, GC (AD, BD)	50S ribosomal protein L2	polymer	276	30532.6	2	UniProt (P60405) Pfam (PF00181) Pfam (PF03947)	Thermus thermophilus HB8
28	BA, HC (AE, BE)	50S ribosomal protein L3	polymer	206	22450.2	2	UniProt (Q5SHN8) Pfam (PF00297)	Thermus thermophilus HB8
29	CA, IC (AF, BF)	50S ribosomal protein L4	polymer	210	23271.9	2	UniProt (Q5SHN9) Pfam (PF00573)	Thermus thermophilus HB8	L1e
30	DA, JC (AG, BG)	50S ribosomal protein L5	polymer	182	21061.6	2	UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673)	Thermus thermophilus HB8
31	EA, KC (AH, BH)	50S ribosomal protein L6	polymer	180	19568.9	2	UniProt (Q5SHQ3) Pfam (PF00347) UniProt (by SIFTS) (P0DOY8)	Thermus thermophilus HB8
32	FA, LC (AI, BI)	50S ribosomal protein L9	polymer	148	16422.2	2	UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948)	Thermus thermophilus HB8
33	GA, MC (AJ, BJ)	50S ribosomal protein L10	polymer	173	18586.6	2	UniProt (Q8VVE3) Pfam (PF00466)	Thermus thermophilus HB8
34	HA, NC (AN, BN)	50S ribosomal protein L13	polymer	140	15927.9	2	UniProt (P60488) Pfam (PF00572)	Thermus thermophilus HB8
35	IA, OC (AO, BO)	50S ribosomal protein L14	polymer	122	13323.6	2	UniProt (Q5SHP8) Pfam (PF00238)	Thermus thermophilus HB8
36	JA, PC (AP, BP)	50S ribosomal protein L15	polymer	150	16319.1	2	UniProt (Q5SHQ7) Pfam (PF00828)	Thermus thermophilus HB8
37	KA, QC (AQ, BQ)	50S ribosomal protein L16	polymer	141	15993.9	2	UniProt (P60489) Pfam (PF00252)	Thermus thermophilus HB8
38	LA, RC (AR, BR)	50S ribosomal protein L17	polymer	118	13750.1	2	UniProt (Q9Z9H5) Pfam (PF01196)	Thermus thermophilus HB8
39	MA, SC (AS, BS)	50S ribosomal protein L18	polymer	112	12639.8	2	UniProt (Q5SHQ4) Pfam (PF00861)	Thermus thermophilus HB8	TL24
40	NA, TC (AT, BT)	50S ribosomal protein L19	polymer	146	17188.8	2	UniProt (P60490) Pfam (PF01245)	Thermus thermophilus HB8
41	OA, UC (AU, BU)	50S ribosomal protein L20	polymer	118	13779.3	2	UniProt (P60491) Pfam (PF00453)	Thermus thermophilus HB8
42	PA, VC (AV, BV)	50S ribosomal protein L21	polymer	101	11069.2	2	UniProt (P60492) Pfam (PF00829)	Thermus thermophilus HB8
43	QA, WC (AW, BW)	50S ribosomal protein L22	polymer	113	12808.1	2	UniProt (Q5SHP3) Pfam (PF00237)	Thermus thermophilus HB8
44	RA, XC (AX, BX)	50S ribosomal protein L23	polymer	96	10759.8	2	UniProt (Q5SHP0) Pfam (PF00276)	Thermus thermophilus HB8
45	SA, YC (AY, BY)	50S ribosomal protein L24	polymer	110	12085.6	2	UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136)	Thermus thermophilus HB8
46	TA, ZC (AZ, BZ)	50S ribosomal protein L25	polymer	206	23238.6	2	UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693)	Thermus thermophilus HB8	TL5
47	AD, UA (A0, B0)	50S ribosomal protein L27	polymer	85	9529.1	2	UniProt (P60493) Pfam (PF01016)	Thermus thermophilus HB8
48	BD, VA (A1, B1)	50S ribosomal protein L28	polymer	98	11004.2	2	UniProt (P60494) Pfam (PF00830)	Thermus thermophilus HB8
49	CD, WA (A2, B2)	50S ribosomal protein L29	polymer	72	8670.3	2	UniProt (Q5SHP6) Pfam (PF00831)	Thermus thermophilus HB8
50	DD, XA (A3, B3)	50S ribosomal protein L30	polymer	60	6799.1	2	UniProt (Q5SHQ6) Pfam (PF00327)	Thermus thermophilus HB8
51	ED, YA (A4, B4)	50S ribosomal protein L31	polymer	71	8300.5	2	UniProt (Q5SJE1) Pfam (PF01197)	Thermus thermophilus HB8
52	FD, ZA (A5, B5)	50S ribosomal protein L32	polymer	60	6722.1	2	UniProt (P80339) Pfam (PF01783)	Thermus thermophilus HB8
53	AB, GD (A6, B6)	50S ribosomal protein L33	polymer	54	6632.9	2	UniProt (P35871) Pfam (PF00471)	Thermus thermophilus HB8
54	BB, HD (A7, B7)	50S ribosomal protein L34	polymer	49	6132.4	2	UniProt (P80340) Pfam (PF00468)	Thermus thermophilus HB8
55	CB, ID (A8, B8)	50S ribosomal protein L35	polymer	65	7506.2	2	UniProt (Q5SKU1) Pfam (PF01632)	Thermus thermophilus HB8
56	DB, JD (A9, B9)	50S ribosomal protein L36	polymer	37	4435.4	2	UniProt (Q5SHR2) Pfam (PF00444)	Thermus thermophilus HB8	Ribosomal protein B
57	EB, KD (AA, BA)	RNA (2848-MER)	polymer	2848	926365.8	2		Thermus thermophilus HB8
58	FB, LD (AB, BB)	RNA (119-MER)	polymer	119	38553.0	2		Thermus thermophilus HB8
59	DY, GY, IEA, MD, NEA... (Bd, Bn, B4, Ad, B9...)	ZINC ION	non-polymer		65.4	8	Chemie (ZN)
60	AAA, ABA, ACA, ADA, AE... (Ba, Aa, Bw, BA, AA...)	MAGNESIUM ION	non-polymer		24.3	1064	Chemie (MG)

Contents of the asymmetric unit

Polymers	Number of chains	116
	Total formula weight	4499119.4
Non-Polymers*	Number of molecules	1072
	Total formula weight	26383.8
All*	Total formula weight	4525503.1

*Water molecules are not included.