4V6I

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

This is a non-PDB format compatible entry.

Replaces:  3IZC

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	Aa	40S ribosomal protein RACK1 (RACK1)	polymer	319	34841.2	1	UniProt (P38011) Pfam (PF00400) In PDB	Saccharomyces cerevisiae (yeast)
2	AA	40S ribosomal protein rpS0 (S2p)	polymer	252	28051.3	1	UniProt (P32905) Pfam (PF00318) In PDB	Saccharomyces cerevisiae (yeast)
3	AB	40S ribosomal protein rpS3 (S3p)	polymer	240	26542.8	1	UniProt (P05750) Pfam (PF07650) Pfam (PF00189) In PDB	Saccharomyces cerevisiae (yeast)
4	AD	40S ribosomal protein rpS4 (S4e)	polymer	261	29469.3	1	UniProt (P05753) In PDB	Saccharomyces cerevisiae (yeast)
5	AC	40S ribosomal protein rpS9 (S4p)	polymer	197	22487.9	1	UniProt (O13516) Pfam (PF00163) Pfam (PF01479) In PDB	Saccharomyces cerevisiae (yeast)
6	AE	40S ribosomal protein rpS2 (S5p)	polymer	254	27490.8	1	UniProt (P25443) Pfam (PF00333) Pfam (PF03719) In PDB	Saccharomyces cerevisiae (yeast)
7	AG	40S ribosomal protein rpS7 (S7e)	polymer	144	12273.1	1		Saccharomyces cerevisiae (yeast)
8	AF	40S ribosomal protein rpS5 (S7p)	polymer	225	25072.6	1	UniProt (P26783) Pfam (PF00177) In PDB	Saccharomyces cerevisiae (yeast)
9	AH	40S ribosomal protein rpS22 (S8p)	polymer	130	14650.1	1	UniProt (P0C0W1) Pfam (PF00410) In PDB	Saccharomyces cerevisiae (yeast)
10	AI	40S ribosomal protein rpS16 (S9p)	polymer	143	15877.5	1	UniProt (P40213) In PDB	Saccharomyces cerevisiae (yeast)
11	AJ	40S ribosomal protein rpS20 (S10p)	polymer	121	13929.0	1	UniProt (P38701) Pfam (PF00338) In PDB	Saccharomyces cerevisiae (yeast)
12	AK	40S ribosomal protein rpS14 (S11p)	polymer	137	14562.7	1	UniProt (P06367) Pfam (PF00411) In PDB	Saccharomyces cerevisiae (yeast)
13	AL	40S ribosomal protein rpS23 (S12p)	polymer	145	16073.9	1	UniProt (P32827) In PDB	Saccharomyces cerevisiae (yeast)
14	AM	40S ribosomal protein rpS18 (S13p)	polymer	146	17071.6	1	UniProt (P35271) In PDB	Saccharomyces cerevisiae (yeast)
15	AN	40S ribosomal protein rpS29 (S14p)	polymer	56	6675.7	1	UniProt (P41057) Pfam (PF00253) In PDB	Saccharomyces cerevisiae (yeast)
16	AO	40S ribosomal protein rpS13 (S15p)	polymer	151	17059.9	1	UniProt (P05756) Pfam (PF08069) Pfam (PF00312) In PDB	Saccharomyces cerevisiae (yeast)
17	AQ	40S ribosomal protein rpS17 (S17e)	polymer	136	15820.4	1	UniProt (P02407) Pfam (PF00833) In PDB	Saccharomyces cerevisiae (yeast)
18	AP	40S ribosomal protein rpS11 (S17p)	polymer	156	17785.9	1	UniProt (P26781) In PDB	Saccharomyces cerevisiae (yeast)
19	AR	40S ribosomal protein rpS15 (S19p)	polymer	142	16031.9	1	UniProt (Q01855) Pfam (PF00203) In PDB	Saccharomyces cerevisiae (yeast)
20	AS	40S ribosomal protein rpS19 (S19e)	polymer	144	15942.1	1	UniProt (P07280) Pfam (PF01090) In PDB	Saccharomyces cerevisiae (yeast)
21	AT	40S ribosomal protein rpS21 (S21e)	polymer	87	9758.8	1	UniProt (P0C0V8) Pfam (PF01249) In PDB	Saccharomyces cerevisiae (yeast)
22	AV	40S ribosomal protein rpS25 (S25e)	polymer	108	12067.3	1	UniProt (Q3E792) Pfam (PF03297) In PDB	Saccharomyces cerevisiae (yeast)
23	AW	40S ribosomal protein rpS26 (S26e)	polymer	93	7932.8	1		Saccharomyces cerevisiae (yeast)
24	AX	40S ribosomal protein rpS27 (S27e)	polymer	82	8893.4	1	UniProt (P35997) Pfam (PF01667) In PDB	Saccharomyces cerevisiae (yeast)
25	AY	40S ribosomal protein rpS28 (S28e)	polymer	67	7605.8	1	UniProt (Q3E7X9) Pfam (PF01200) In PDB	Saccharomyces cerevisiae (yeast)
26	AZ	40S ribosomal protein rpS30 (S30e)	polymer	63	7137.5	1	UniProt (Q12087) In PDB	Saccharomyces cerevisiae (yeast)
27	Ab	Unknown 40S ribosomal protein XS1	polymer	37	3166.9	1		Saccharomyces cerevisiae (yeast)
28	Ac	Unknown 40S ribosomal protein XS2	polymer	26	2230.7	1		Saccharomyces cerevisiae (yeast)
29	AU	40S ribosomal protein S24	polymer	135	15362.8	1	UniProt (P26782) In PDB	Saccharomyces cerevisiae (yeast)
30	BA	60S ribosomal protein rpL1 (L1p)	polymer	217	24524.8	1	UniProt (P53030) In PDB	Saccharomyces cerevisiae (yeast)
31	BB	60S ribosomal protein rpL2 (L2p)	polymer	254	27463.6	1	UniProt (P05736) In PDB	Saccharomyces cerevisiae (yeast)
32	BC	60S ribosomal protein rpL3 (L3p)	polymer	388	43907.8	1	UniProt (P14126) Pfam (PF00297) In PDB	Saccharomyces cerevisiae (yeast)
33	BD	60S ribosomal protein rpL4 (L4p)	polymer	362	39159.1	1	UniProt (P10664) Pfam (PF00573) Pfam (PF14374) In PDB	Saccharomyces cerevisiae (yeast)
34	BE	60S ribosomal protein rpL11 (L5p)	polymer	174	19755.7	1	UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) In PDB	Saccharomyces cerevisiae (yeast)
35	BG	60S ribosomal protein rpL6 (L6e)	polymer	176	20000.6	1	UniProt (Q02326) Pfam (PF01159) In PDB	Saccharomyces cerevisiae (yeast)
36	BF	60S ribosomal protein rpL9 (L6p)	polymer	191	21605.1	1	UniProt (P05738) Pfam (PF00347) In PDB	Saccharomyces cerevisiae (yeast)
37	BH	60S ribosomal protein rpL8 (L7ae)	polymer	256	28175.8	1	UniProt (P17076) Pfam (PF01248) In PDB	Saccharomyces cerevisiae (yeast)
38	Bs	60S acidic ribosomal protein rpP0 (L10P)	polymer	312	33749.1	1	UniProt (P05317) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) In PDB	Saccharomyces cerevisiae (yeast)
39	BJ	60S ribosomal protein rpL12 (L11p)	polymer	165	17850.6	1	UniProt (P17079) In PDB	Saccharomyces cerevisiae (yeast)
40	BK	60S ribosomal protein rpL16 (L13p)	polymer	199	22247.2	1	UniProt (P26784) Pfam (PF00572) In PDB	Saccharomyces cerevisiae (yeast)
41	BN	60S ribosomal protein rpL14 (L14e)	polymer	138	15195.1	1	UniProt (D6VXT1) Pfam (PF00467) Pfam (PF01929) UniProt (by SIFTS) (P36105) In PDB	Saccharomyces cerevisiae (yeast)
42	BM	60S ribosomal protein rpL23 (L14p)	polymer	137	14494.0	1	UniProt (P04451) In PDB	Saccharomyces cerevisiae (yeast)
43	BP	60S ribosomal protein rpL15 (L15e)	polymer	204	24482.4	1	UniProt (P05748) Pfam (PF00827) In PDB	Saccharomyces cerevisiae (yeast)
44	BO	60S ribosomal protein rpL28 (L15p)	polymer	149	16761.7	1	UniProt (P02406) Pfam (PF00828) In PDB	Saccharomyces cerevisiae (yeast)
45	BR	60S ribosomal protein rpL18 (L18e)	polymer	186	20609.3	1	UniProt (P07279) In PDB	Saccharomyces cerevisiae (yeast)
46	BT	60S ribosomal protein rpL19 (L19e)	polymer	189	21762.3	1	UniProt (P05735) In PDB	Saccharomyces cerevisiae (yeast)
47	BU	60S ribosomal protein rpL21 (L21e)	polymer	160	18279.3	1	UniProt (Q02753) Pfam (PF01157) In PDB	Saccharomyces cerevisiae (yeast)
48	BW	60S ribosomal protein rpL22 (L22e)	polymer	121	13711.4	1	UniProt (P05749) Pfam (PF01776) In PDB	Saccharomyces cerevisiae (yeast)
49	BV	60S ribosomal protein rpL17 (L22p)	polymer	170	19007.6	1	UniProt (P05740) Pfam (PF00237) In PDB	Saccharomyces cerevisiae (yeast)
50	BX	60S ribosomal protein rpL25 (L23p)	polymer	142	15787.6	1	UniProt (P04456) Pfam (PF03939) Pfam (PF00276) In PDB	Saccharomyces cerevisiae (yeast)
51	BZ	60S ribosomal protein rpL24 (L24e)	polymer	155	17661.7	1	UniProt (P04449) Pfam (PF01246) In PDB	Saccharomyces cerevisiae (yeast)
52	BY	60S ribosomal protein rpL26 (L24p)	polymer	123	13837.3	1	UniProt (P05743) Pfam (PF16906) Pfam (PF00467) In PDB	Saccharomyces cerevisiae (yeast)
53	Ba	60S ribosomal protein rpL27 (L27e)	polymer	136	15568.4	1	UniProt (P0C2H6) Pfam (PF01777) In PDB	Saccharomyces cerevisiae (yeast)
54	Bd	60S ribosomal protein rpL29 (L29e)	polymer	59	6691.9	1	UniProt (P05747) Pfam (PF01779) In PDB	Saccharomyces cerevisiae (yeast)
55	Bc	60S ribosomal protein rpL35 (L29p)	polymer	120	13942.6	1	UniProt (P39741) In PDB	Saccharomyces cerevisiae (yeast)
56	Bf	60S ribosomal protein rpL30 (L30e)	polymer	105	11430.4	1	UniProt (P14120) Pfam (PF01248) In PDB	Saccharomyces cerevisiae (yeast)
57	Be	60S ribosomal protein rpL7 (L30p)	polymer	244	27686.3	1	UniProt (P05737) Pfam (PF08079) Pfam (PF00327) In PDB	Saccharomyces cerevisiae (yeast)
58	Bg	60S ribosomal protein rpL31 (L31e)	polymer	113	12980.2	1	UniProt (P0C2H8) Pfam (PF01198) In PDB	Saccharomyces cerevisiae (yeast)
59	Bh	60S ribosomal protein pL32 (L32e)	polymer	130	14809.4	1	UniProt (P38061) Pfam (PF01655) In PDB	Saccharomyces cerevisiae (yeast)
60	Bi	60S ribosomal protein rpL34 (L34e)	polymer	118	13343.8	1	UniProt (P87262) Pfam (PF01199) In PDB	Saccharomyces cerevisiae (yeast)
61	Bj	60S ribosomal protein rpL33 (L35ae)	polymer	107	12177.1	1	UniProt (P05744) Pfam (PF01247) In PDB	Saccharomyces cerevisiae (yeast)
62	Bk	60S ribosomal protein rpL36 (L36e)	polymer	100	11151.3	1	UniProt (P05745) Pfam (PF01158) In PDB	Saccharomyces cerevisiae (yeast)
63	Bm	60S ribosomal protein rpL43 (L37ae)	polymer	92	10113.0	1	UniProt (P49631) In PDB	Saccharomyces cerevisiae (yeast)
64	Bl	60S ribosomal protein rpL37 (L37e)	polymer	88	9877.4	1	UniProt (P49166) Pfam (PF01907) In PDB	Saccharomyces cerevisiae (yeast)
65	Bn	60S ribosomal protein rpL38 (L38e)	polymer	78	8845.6	1	UniProt (P49167) Pfam (PF01781) In PDB	Saccharomyces cerevisiae (yeast)
66	Bo	60S ribosomal protein rpL39 (L39e)	polymer	51	6358.6	1	UniProt (P04650) Pfam (PF00832) In PDB	Saccharomyces cerevisiae (yeast)
67	Bp	60S ribosomal protein rpL40 (L40e)	polymer	52	6032.3	1	UniProt (P0CH08) Pfam (PF01020) In PDB	Saccharomyces cerevisiae (yeast)
68	Bq	60S ribosomal protein rpL41 (L41e)	polymer	25	3354.2	1	UniProt (P05746) In PDB	Saccharomyces cerevisiae (yeast)
69	Br	60S ribosomal protein rpL42 (L44e)	polymer	106	12246.7	1	UniProt (P02405) In PDB	Saccharomyces cerevisiae (yeast)
70	Bx, By	Unknown protein	polymer	21	1805.2	2		Saccharomyces cerevisiae (yeast)
71	Bz	Unknown protein	polymer	15	1294.6	1		Saccharomyces cerevisiae (yeast)
72	Bt, Bu	60S acidic ribosomal protein rpP11 (P1)	polymer	106	10928.8	2	UniProt (P05318) Pfam (PF00428) In PDB	Saccharomyces cerevisiae (yeast)
73	Bv, Bw	60S acidic ribosomal protein (P2)	polymer	106	10752.7	2	UniProt (P05319) Pfam (PF00428) In PDB	Saccharomyces cerevisiae (yeast)
74	BQ	60S ribosomal protein rpL5 (L18p)	polymer	297	33792.8	1	UniProt (P26321) Pfam (PF17144) Pfam (PF14204) In PDB	Saccharomyces cerevisiae (yeast)
75	BL	60S ribosomal protein rpL13 (L13e)	polymer	170	14485.8	1		Saccharomyces cerevisiae (yeast)
76	BS	60S ribosomal protein rpL20 (L18ae)	polymer	167	20148.7	1	UniProt (Q0JJA0) Pfam (PF01775) UniProt (by SIFTS) (Q943F3) In PDB	Saccharomyces cerevisiae (yeast)
77	BI	60S ribosomal protein rpL10 (L10e)	polymer	221	25410.5	1	UniProt (P41805) Pfam (PF00252) In PDB	Saccharomyces cerevisiae (yeast)
78	CA	18S rRNA	polymer	1800	579761.9	1	GenBank (U53879.1)	Saccharomyces cerevisiae (yeast)
79	CB	P-SITE TRNA ASP	polymer	75	24135.3	1	GenBank (M25599.1)	Saccharomyces cerevisiae (yeast)
80	CC	MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')	polymer	11	3498.2	1		Saccharomyces cerevisiae (yeast)
81	DA	25S rRNA	polymer	3396	1097493.9	1	GenBank (U53879.1)	Saccharomyces cerevisiae (yeast)
82	DB	5.8S rRNA	polymer	158	50682.9	1	GenBank (U53879.1)	Saccharomyces cerevisiae (yeast)
83	DC	5S rRNA	polymer	118	37947.5	1	GenBank (U53879.1)	Saccharomyces cerevisiae (yeast)

Sequence modifications

BC: 1 - 387 (UniProt: P14126)

PDB	External Database	Details
Gly 388	-	expression tag

Bt, Bu: 1 - 106 (UniProt: P05318)

PDB	External Database	Details
Asp 37	Val 37	conflict

BQ: 1 - 297 (UniProt: P26321)

PDB	External Database	Details
Arg 112	Lys 112	conflict

Contents of the asymmetric unit

Polymers	Number of chains	86
	Total formula weight	3104129.6
All*	Total formula weight	3104129.6

*Water molecules are not included.