4V6I
Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
This is a non-PDB format compatible entry.
Replaces: 3IZCEntity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (Aa) | 40S ribosomal protein RACK1 (RACK1) | polymer | 319 | 34841.2 | 1 | UniProt (P38011) Pfam (PF00400) | Saccharomyces cerevisiae (yeast) | |
| 2 | B (AA) | 40S ribosomal protein rpS0 (S2p) | polymer | 252 | 28051.3 | 1 | UniProt (P32905) Pfam (PF00318) | Saccharomyces cerevisiae (yeast) | |
| 3 | C (AB) | 40S ribosomal protein rpS3 (S3p) | polymer | 240 | 26542.8 | 1 | UniProt (P05750) Pfam (PF07650) Pfam (PF00189) | Saccharomyces cerevisiae (yeast) | |
| 4 | D (AD) | 40S ribosomal protein rpS4 (S4e) | polymer | 261 | 29469.3 | 1 | UniProt (P05753) Pfam (PF00467) Pfam (PF16121) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) UniProt (by SIFTS) (P0CX35) | Saccharomyces cerevisiae (yeast) | |
| 5 | E (AC) | 40S ribosomal protein rpS9 (S4p) | polymer | 197 | 22487.9 | 1 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) | Saccharomyces cerevisiae (yeast) | |
| 6 | F (AE) | 40S ribosomal protein rpS2 (S5p) | polymer | 254 | 27490.8 | 1 | UniProt (P25443) Pfam (PF00333) Pfam (PF03719) | Saccharomyces cerevisiae (yeast) | |
| 7 | G (AG) | 40S ribosomal protein rpS7 (S7e) | polymer | 144 | 12273.1 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 8 | H (AF) | 40S ribosomal protein rpS5 (S7p) | polymer | 225 | 25072.6 | 1 | UniProt (P26783) Pfam (PF00177) | Saccharomyces cerevisiae (yeast) | |
| 9 | I (AH) | 40S ribosomal protein rpS22 (S8p) | polymer | 130 | 14650.1 | 1 | UniProt (P0C0W1) Pfam (PF00410) | Saccharomyces cerevisiae (yeast) | |
| 10 | J (AI) | 40S ribosomal protein rpS16 (S9p) | polymer | 143 | 15877.5 | 1 | UniProt (P40213) Pfam (PF00380) UniProt (by SIFTS) (P0CX51) | Saccharomyces cerevisiae (yeast) | |
| 11 | K (AJ) | 40S ribosomal protein rpS20 (S10p) | polymer | 121 | 13929.0 | 1 | UniProt (P38701) Pfam (PF00338) | Saccharomyces cerevisiae (yeast) | |
| 12 | L (AK) | 40S ribosomal protein rpS14 (S11p) | polymer | 137 | 14562.7 | 1 | UniProt (P06367) Pfam (PF00411) | Saccharomyces cerevisiae (yeast) | |
| 13 | M (AL) | 40S ribosomal protein rpS23 (S12p) | polymer | 145 | 16073.9 | 1 | UniProt (P32827) Pfam (PF00164) UniProt (by SIFTS) (P0CX29) | Saccharomyces cerevisiae (yeast) | |
| 14 | N (AM) | 40S ribosomal protein rpS18 (S13p) | polymer | 146 | 17071.6 | 1 | UniProt (P35271) Pfam (PF00416) UniProt (by SIFTS) (P0CX55) | Saccharomyces cerevisiae (yeast) | |
| 15 | O (AN) | 40S ribosomal protein rpS29 (S14p) | polymer | 56 | 6675.7 | 1 | UniProt (P41057) Pfam (PF00253) | Saccharomyces cerevisiae (yeast) | |
| 16 | P (AO) | 40S ribosomal protein rpS13 (S15p) | polymer | 151 | 17059.9 | 1 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) | Saccharomyces cerevisiae (yeast) | |
| 17 | Q (AQ) | 40S ribosomal protein rpS17 (S17e) | polymer | 136 | 15820.4 | 1 | UniProt (P02407) Pfam (PF00833) | Saccharomyces cerevisiae (yeast) | |
| 18 | R (AP) | 40S ribosomal protein rpS11 (S17p) | polymer | 156 | 17785.9 | 1 | UniProt (P26781) Pfam (PF16205) Pfam (PF00366) UniProt (by SIFTS) (P0CX47) | Saccharomyces cerevisiae (yeast) | |
| 19 | S (AR) | 40S ribosomal protein rpS15 (S19p) | polymer | 142 | 16031.9 | 1 | UniProt (Q01855) Pfam (PF00203) | Saccharomyces cerevisiae (yeast) | |
| 20 | T (AS) | 40S ribosomal protein rpS19 (S19e) | polymer | 144 | 15942.1 | 1 | UniProt (P07280) Pfam (PF01090) | Saccharomyces cerevisiae (yeast) | |
| 21 | U (AT) | 40S ribosomal protein rpS21 (S21e) | polymer | 87 | 9758.8 | 1 | UniProt (P0C0V8) Pfam (PF01249) | Saccharomyces cerevisiae (yeast) | |
| 22 | V (AV) | 40S ribosomal protein rpS25 (S25e) | polymer | 108 | 12067.3 | 1 | UniProt (Q3E792) Pfam (PF03297) | Saccharomyces cerevisiae (yeast) | |
| 23 | W (AW) | 40S ribosomal protein rpS26 (S26e) | polymer | 93 | 7932.8 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 24 | X (AX) | 40S ribosomal protein rpS27 (S27e) | polymer | 82 | 8893.4 | 1 | UniProt (P35997) Pfam (PF01667) | Saccharomyces cerevisiae (yeast) | |
| 25 | Y (AY) | 40S ribosomal protein rpS28 (S28e) | polymer | 67 | 7605.8 | 1 | UniProt (Q3E7X9) Pfam (PF01200) | Saccharomyces cerevisiae (yeast) | |
| 26 | Z (AZ) | 40S ribosomal protein rpS30 (S30e) | polymer | 63 | 7137.5 | 1 | UniProt (Q12087) Pfam (PF04758) UniProt (by SIFTS) (P0CX33) | Saccharomyces cerevisiae (yeast) | |
| 27 | AA (Ab) | Unknown 40S ribosomal protein XS1 | polymer | 37 | 3166.9 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 28 | BA (Ac) | Unknown 40S ribosomal protein XS2 | polymer | 26 | 2230.7 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 29 | CA (AU) | 40S ribosomal protein S24 | polymer | 135 | 15362.8 | 1 | UniProt (P26782) Pfam (PF01282) UniProt (by SIFTS) (P0CX31) | Saccharomyces cerevisiae (yeast) | |
| 30 | DA (BA) | 60S ribosomal protein rpL1 (L1p) | polymer | 217 | 24524.8 | 1 | UniProt (P53030) Pfam (PF00687) UniProt (by SIFTS) (P0CX43) | Saccharomyces cerevisiae (yeast) | |
| 31 | EA (BB) | 60S ribosomal protein rpL2 (L2p) | polymer | 254 | 27463.6 | 1 | UniProt (P05736) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P0CX45) | Saccharomyces cerevisiae (yeast) | |
| 32 | FA (BC) | 60S ribosomal protein rpL3 (L3p) | polymer | 388 | 43907.8 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae (yeast) | |
| 33 | GA (BD) | 60S ribosomal protein rpL4 (L4p) | polymer | 362 | 39159.1 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) | Saccharomyces cerevisiae (yeast) | |
| 34 | HA (BE) | 60S ribosomal protein rpL11 (L5p) | polymer | 174 | 19755.7 | 1 | UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae (yeast) | |
| 35 | IA (BG) | 60S ribosomal protein rpL6 (L6e) | polymer | 176 | 20000.6 | 1 | UniProt (Q02326) Pfam (PF01159) | Saccharomyces cerevisiae (yeast) | |
| 36 | JA (BF) | 60S ribosomal protein rpL9 (L6p) | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) | Saccharomyces cerevisiae (yeast) | |
| 37 | KA (BH) | 60S ribosomal protein rpL8 (L7ae) | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae (yeast) | |
| 38 | LA (Bs) | 60S acidic ribosomal protein rpP0 (L10P) | polymer | 312 | 33749.1 | 1 | UniProt (P05317) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) | Saccharomyces cerevisiae (yeast) | |
| 39 | MA (BJ) | 60S ribosomal protein rpL12 (L11p) | polymer | 165 | 17850.6 | 1 | UniProt (P17079) Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (P0CX53) | Saccharomyces cerevisiae (yeast) | |
| 40 | NA (BK) | 60S ribosomal protein rpL16 (L13p) | polymer | 199 | 22247.2 | 1 | UniProt (P26784) Pfam (PF00572) | Saccharomyces cerevisiae (yeast) | |
| 41 | OA (BN) | 60S ribosomal protein rpL14 (L14e) | polymer | 138 | 15195.1 | 1 | UniProt (D6VXT1) Pfam (PF00467) Pfam (PF01929) UniProt (by SIFTS) (P36105) | Saccharomyces cerevisiae (yeast) | |
| 42 | PA (BM) | 60S ribosomal protein rpL23 (L14p) | polymer | 137 | 14494.0 | 1 | UniProt (P04451) Pfam (PF00238) UniProt (by SIFTS) (P0CX41) | Saccharomyces cerevisiae (yeast) | |
| 43 | QA (BP) | 60S ribosomal protein rpL15 (L15e) | polymer | 204 | 24482.4 | 1 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae (yeast) | |
| 44 | RA (BO) | 60S ribosomal protein rpL28 (L15p) | polymer | 149 | 16761.7 | 1 | UniProt (P02406) Pfam (PF00828) | Saccharomyces cerevisiae (yeast) | |
| 45 | SA (BR) | 60S ribosomal protein rpL18 (L18e) | polymer | 186 | 20609.3 | 1 | UniProt (P07279) | Saccharomyces cerevisiae (yeast) | |
| 46 | TA (BT) | 60S ribosomal protein rpL19 (L19e) | polymer | 189 | 21762.3 | 1 | UniProt (P05735) Pfam (PF01280) UniProt (by SIFTS) (P0CX82) | Saccharomyces cerevisiae (yeast) | |
| 47 | UA (BU) | 60S ribosomal protein rpL21 (L21e) | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) Pfam (PF01157) | Saccharomyces cerevisiae (yeast) | |
| 48 | VA (BW) | 60S ribosomal protein rpL22 (L22e) | polymer | 121 | 13711.4 | 1 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae (yeast) | |
| 49 | WA (BV) | 60S ribosomal protein rpL17 (L22p) | polymer | 170 | 19007.6 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae (yeast) | |
| 50 | XA (BX) | 60S ribosomal protein rpL25 (L23p) | polymer | 142 | 15787.6 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) | Saccharomyces cerevisiae (yeast) | |
| 51 | YA (BZ) | 60S ribosomal protein rpL24 (L24e) | polymer | 155 | 17661.7 | 1 | UniProt (P04449) Pfam (PF01246) | Saccharomyces cerevisiae (yeast) | |
| 52 | ZA (BY) | 60S ribosomal protein rpL26 (L24p) | polymer | 123 | 13837.3 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae (yeast) | |
| 53 | AB (Ba) | 60S ribosomal protein rpL27 (L27e) | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae (yeast) | |
| 54 | BB (Bd) | 60S ribosomal protein rpL29 (L29e) | polymer | 59 | 6691.9 | 1 | UniProt (P05747) Pfam (PF01779) | Saccharomyces cerevisiae (yeast) | |
| 55 | CB (Bc) | 60S ribosomal protein rpL35 (L29p) | polymer | 120 | 13942.6 | 1 | UniProt (P39741) | Saccharomyces cerevisiae (yeast) | |
| 56 | DB (Bf) | 60S ribosomal protein rpL30 (L30e) | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae (yeast) | |
| 57 | EB (Be) | 60S ribosomal protein rpL7 (L30p) | polymer | 244 | 27686.3 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) | Saccharomyces cerevisiae (yeast) | |
| 58 | FB (Bg) | 60S ribosomal protein rpL31 (L31e) | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae (yeast) | |
| 59 | GB (Bh) | 60S ribosomal protein pL32 (L32e) | polymer | 130 | 14809.4 | 1 | UniProt (P38061) Pfam (PF01655) | Saccharomyces cerevisiae (yeast) | |
| 60 | HB (Bi) | 60S ribosomal protein rpL34 (L34e) | polymer | 118 | 13343.8 | 1 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae (yeast) | |
| 61 | IB (Bj) | 60S ribosomal protein rpL33 (L35ae) | polymer | 107 | 12177.1 | 1 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae (yeast) | |
| 62 | JB (Bk) | 60S ribosomal protein rpL36 (L36e) | polymer | 100 | 11151.3 | 1 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae (yeast) | |
| 63 | KB (Bm) | 60S ribosomal protein rpL43 (L37ae) | polymer | 92 | 10113.0 | 1 | UniProt (P49631) Pfam (PF01780) UniProt (by SIFTS) (P0CX25) | Saccharomyces cerevisiae (yeast) | |
| 64 | LB (Bl) | 60S ribosomal protein rpL37 (L37e) | polymer | 88 | 9877.4 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae (yeast) | |
| 65 | MB (Bn) | 60S ribosomal protein rpL38 (L38e) | polymer | 78 | 8845.6 | 1 | UniProt (P49167) Pfam (PF01781) | Saccharomyces cerevisiae (yeast) | |
| 66 | NB (Bo) | 60S ribosomal protein rpL39 (L39e) | polymer | 51 | 6358.6 | 1 | UniProt (P04650) Pfam (PF00832) | Saccharomyces cerevisiae (yeast) | |
| 67 | OB (Bp) | 60S ribosomal protein rpL40 (L40e) | polymer | 52 | 6032.3 | 1 | UniProt (P0CH08) Pfam (PF01020) | Saccharomyces cerevisiae (yeast) | |
| 68 | PB (Bq) | 60S ribosomal protein rpL41 (L41e) | polymer | 25 | 3354.2 | 1 | UniProt (P05746) Pfam (PF05162) UniProt (by SIFTS) (P0CX86) | Saccharomyces cerevisiae (yeast) | |
| 69 | QB (Br) | 60S ribosomal protein rpL42 (L44e) | polymer | 106 | 12246.7 | 1 | UniProt (P02405) Pfam (PF00935) UniProt (by SIFTS) (P0CX27) | Saccharomyces cerevisiae (yeast) | |
| 70 | RB, SB (Bx, By) | Unknown protein | polymer | 21 | 1805.2 | 2 | Saccharomyces cerevisiae (yeast) | ||
| 71 | TB (Bz) | Unknown protein | polymer | 15 | 1294.6 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 72 | UB, VB (Bt, Bu) | 60S acidic ribosomal protein rpP11 (P1) | polymer | 106 | 10928.8 | 2 | UniProt (P05318) Pfam (PF00428) | Saccharomyces cerevisiae (yeast) | |
| 73 | WB, XB (Bv, Bw) | 60S acidic ribosomal protein (P2) | polymer | 106 | 10752.7 | 2 | UniProt (P05319) Pfam (PF00428) | Saccharomyces cerevisiae (yeast) | |
| 74 | YB (BQ) | 60S ribosomal protein rpL5 (L18p) | polymer | 297 | 33792.8 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) | Saccharomyces cerevisiae (yeast) | |
| 75 | ZB (BL) | 60S ribosomal protein rpL13 (L13e) | polymer | 170 | 14485.8 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 76 | AC (BS) | 60S ribosomal protein rpL20 (L18ae) | polymer | 167 | 20148.7 | 1 | UniProt (Q0JJA0) Pfam (PF01775) UniProt (by SIFTS) (Q943F3) | Saccharomyces cerevisiae (yeast) | |
| 77 | BC (BI) | 60S ribosomal protein rpL10 (L10e) | polymer | 221 | 25410.5 | 1 | UniProt (P41805) Pfam (PF00252) | Saccharomyces cerevisiae (yeast) | |
| 78 | CC (CA) | 18S rRNA | polymer | 1800 | 579761.9 | 1 | GenBank (U53879.1) | Saccharomyces cerevisiae (yeast) | |
| 79 | DC (CB) | P-SITE TRNA ASP | polymer | 75 | 24135.3 | 1 | GenBank (M25599.1) | Saccharomyces cerevisiae (yeast) | |
| 80 | EC (CC) | MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3') | polymer | 11 | 3498.2 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 81 | FC (DA) | 25S rRNA | polymer | 3396 | 1097493.9 | 1 | GenBank (U53879.1) | Saccharomyces cerevisiae (yeast) | |
| 82 | GC (DB) | 5.8S rRNA | polymer | 158 | 50682.9 | 1 | GenBank (U53879.1) | Saccharomyces cerevisiae (yeast) | |
| 83 | HC (DC) | 5S rRNA | polymer | 118 | 37947.5 | 1 | GenBank (U53879.1) | Saccharomyces cerevisiae (yeast) |
Sequence modifications
BC: 1 - 387 (UniProt: P14126)
Bt, Bu: 1 - 106 (UniProt: P05318)
BQ: 1 - 297 (UniProt: P26321)
| PDB | External Database | Details |
|---|---|---|
| Gly 388 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Asp 37 | Val 37 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 112 | Lys 112 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 86 |
| Total formula weight | 3104129.6 | |
| All* | Total formula weight | 3104129.6 |
