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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V63

Structural basis for translation termination on the 70S ribosome.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, EB
(AA, CA)		16S RRNApolymer1525494985.92GenBank (155076)Thermus thermophilus
2B, D, FB, HB
(AZ, AY, CZ, CY)		P and E-site tRNA(fMet)polymer7724802.84Escherichia coli
3C, GB
(AV, CV)		mRNApolymer278862.52
4E, IB
(AB, CB)		30S ribosomal protein S2polymer25629317.72UniProt (P62662)
Pfam (PF00318)		Thermus thermophilus
5F, JB
(AC, CC)		30S ribosomal protein S3polymer23926751.12UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)		Thermus thermophilus
6G, KB
(AD, CD)		30S ribosomal protein S4polymer20924373.42UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)		Thermus thermophilus
7H, LB
(AE, CE)		30S ribosomal protein S5polymer16217583.42UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)		Thermus thermophilus
8I, MB
(AF, CF)		30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)		Thermus thermophilus
9J, NB
(AG, CG)		30S ribosomal protein S7polymer15618051.02UniProt (P62667)
Pfam (PF00177)		Thermus thermophilus
10K, OB
(AH, CH)		30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)		Thermus thermophilus
11L, PB
(AI, CI)		30S ribosomal protein S9polymer12814429.72UniProt (P62669)
Pfam (PF00380)		Thermus thermophilus
12M, QB
(AJ, CJ)		30S ribosomal protein S10polymer10511955.02UniProt (P62653)
Pfam (PF00338)		Thermus thermophilus
13N, RB
(AK, CK)		30S ribosomal protein S11polymer12913737.92UniProt (P62654)
Pfam (PF00411)		Thermus thermophilus
14O, SB
(AL, CL)		30S ribosomal protein S12polymer13414821.62UniProt (P61941)
Pfam (PF00164)		Thermus thermophilus
15P, TB
(AM, CM)		30S ribosomal protein S13polymer12614338.92UniProt (P62655)
Pfam (PF00416)		Thermus thermophilus
16Q, UB
(AN, CN)		30S ribosomal protein S14polymer617158.72UniProt (P62656)
Pfam (PF00253)		Thermus thermophilus
17R, VB
(AO, CO)		30S ribosomal protein S15polymer8910578.42UniProt (P62657)
Pfam (PF00312)		Thermus thermophilus
18S, WB
(AP, CP)		30S ribosomal protein S16polymer8810410.02UniProt (P62238)
Pfam (PF00886)		Thermus thermophilus
19T, XB
(AQ, CQ)		30S ribosomal protein S17polymer10512324.72UniProt (P62658)
Pfam (PF00366)		Thermus thermophilus
20U, YB
(AR, CR)		30S ribosomal protein S18polymer8810258.32UniProt (P62659)
Pfam (PF01084)		Thermus thermophilus
21V, ZB
(AS, CS)		30S ribosomal protein S19polymer9310605.52UniProt (P62660)
Pfam (PF00203)		Thermus thermophilus
22AC, W
(AT, CT)		30S ribosomal protein S20polymer10611722.12UniProt (P62661)
Pfam (PF01649)		Thermus thermophilus
23BC, X
(AU, CU)		30S ribosomal protein Thxpolymer273350.02UniProt (P62613)
Pfam (PF17070)		Thermus thermophilus
24CC, Y
(AX, CX)		Peptide chain release factor 1polymer35440153.52UniProt (Q72HB8)
Pfam (PF03462)
Pfam (PF00472)		Thermus thermophilusRF1
25GD, Z
(BA, DA)		23S RRNApolymer2894941050.92Thermus thermophilus
26AA, HD
(BB, DB)		5S RRNApolymer12440152.92GenBank (48271)Thermus thermophilus
27BA, DC
(BD, DD)		50S ribosomal protein L2polymer27630532.62UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)		Thermus thermophilus
28CA, EC
(BE, DE)		50S ribosomal protein L3polymer20622450.22UniProt (Q72I04)
Pfam (PF00297)		Thermus thermophilus
29DA, FC
(BF, DF)		50S ribosomal protein L4polymer21023304.02UniProt (Q72I05)
Pfam (PF00573)		Thermus thermophilus
30EA, GC
(BG, DG)		50S ribosomal protein L5polymer18221075.62UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)		Thermus thermophilus
31FA, HC
(BH, DH)		50S ribosomal protein L6polymer18019568.92UniProt (Q72I19)
Pfam (PF00347)		Thermus thermophilus
32GA, IC
(BI, DI)		50S ribosomal protein L9polymer14816436.22UniProt (Q72GV5)
Pfam (PF01281)
Pfam (PF03948)		Thermus thermophilus
33HA, JC
(BJ, DJ)		50S ribosomal protein L10polymer17318586.62UniProt (Q72GS1)
Pfam (PF00466)		Thermus thermophilus
34IA, KC
(BN, DN)		50S ribosomal protein L13polymer16318534.02UniProt (Q72IN1)
Pfam (PF00572)		Thermus thermophilus
35JA, LC
(BO, DO)		50S ribosomal protein L14polymer12213309.62UniProt (Q72I14)
Pfam (PF00238)		Thermus thermophilus
36KA, MC
(BP, DP)		50S ribosomal protein L15polymer15016319.12UniProt (Q72I23)
Pfam (PF00828)		Thermus thermophilus
37LA, NC
(BQ, DQ)		50S ribosomal protein L16polymer14115977.92UniProt (Q72I11)
Pfam (PF00252)		Thermus thermophilus
38MA, OC
(BR, DR)		50S ribosomal protein L17polymer11813750.12UniProt (Q72I33)
Pfam (PF01196)		Thermus thermophilus
39NA, PC
(BS, DS)		50S ribosomal protein L18polymer11212639.82UniProt (Q72I20)
Pfam (PF00861)		Thermus thermophilus
40OA, QC
(BT, DT)		50S ribosomal protein L19polymer14617217.92UniProt (Q72JU9)
Pfam (PF01245)		Thermus thermophilus
41PA, RC
(BU, DU)		50S ribosomal protein L20polymer11813779.32UniProt (Q72L76)
Pfam (PF00453)		Thermus thermophilus
42QA, SC
(BV, DV)		50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)		Thermus thermophilus
43RA, TC
(BW, DW)		50S ribosomal protein L22polymer11312808.12UniProt (Q72I09)
Pfam (PF00237)		Thermus thermophilus
44SA, UC
(BX, DX)		50S ribosomal protein L23polymer9610759.82UniProt (Q72I06)
Pfam (PF00276)		Thermus thermophilus
45TA, VC
(BY, DY)		50S ribosomal protein L24polymer11012085.62UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)		Thermus thermophilus
46UA, WC
(BZ, DZ)		50S ribosomal protein L25polymer20623238.62UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)		Thermus thermophilusTL5, General stress protein CTC
47VA, XC
(B0, D0)		50S ribosomal protein L27polymer859501.12UniProt (Q72HR3)
Pfam (PF01016)		Thermus thermophilus
48WA, YC
(B1, D1)		50S ribosomal protein L28polymer9811032.22UniProt (Q72G84)
Pfam (PF00830)		Thermus thermophilus
49XA, ZC
(B2, D2)		50S ribosomal protein L29polymer728670.32UniProt (Q72I12)
Pfam (PF00831)		Thermus thermophilus
50AD, YA
(B3, D3)		50S ribosomal protein L30polymer606799.12UniProt (Q72I22)
Pfam (PF00327)		Thermus thermophilus
51BD, ZA
(B4, D4)		50S ribosomal protein L31polymer9711275.02UniProt (Q72JR0)
Pfam (PF01197)		Thermus thermophilus
52AB, CD
(B5, D5)		50S ribosomal protein L32polymer606734.12UniProt (P62652)
Pfam (PF01783)		Thermus thermophilus
53BB, DD
(B6, D6)		50S ribosomal protein L33polymer546632.92UniProt (Q72GW3)
Pfam (PF00471)		Thermus thermophilus
54CB, ED
(B7, D7)		50S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)		Thermus thermophilus
55DB, FD
(B8, D8)		50S ribosomal protein L35polymer657506.22UniProt (Q72L77)
Pfam (PF01632)		Thermus thermophilus
56AAA, AAB, AAC, ABA, ABB...
(BA, CA, DA, AA, AY...)		MAGNESIUM IONnon-polymer24.32577Chemie (MG)
57ISB, QR, UQ, VRB
(CN, AN, AD, CD)		ZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
AA, CA: -1 - 1546 (GenBank: 155076)
PDBExternal DatabaseDetails
G 466C 1101conflict
AL, CL: 1 - 134 (UniProt: P61941)
PDBExternal DatabaseDetails
Ala 2-insertion
Leu 3-insertion
BB, DB: 0 - 119 (GenBank: 48271)
PDBExternal DatabaseDetails
A -1-insertion
U 120-insertion
U 121-insertion
BF, DF: 6 - 210 (UniProt: Q72I05)
PDBExternal DatabaseDetails
Met 1-insertion
Lys 2-insertion
Glu 3-insertion
Val 4-insertion
Ala 5-insertion
BN, DN: 1 - 163 (UniProt: Q72IN1)
PDBExternal DatabaseDetails
Val 2-insertion
Lys 3-insertion
Ser 4-insertion
Ser 5-insertion
Leu 6-insertion
Ala 7-insertion
Phe 8-insertion
Leu 9-insertion
Arg 10-insertion
Gly 11-insertion
Pro 12-insertion
Pro 13-insertion
Ile 14-insertion
Pro 15-insertion
Arg 16-insertion
Gln 17-insertion
Glu 18-insertion
Gln 19-insertion
Arg 20-insertion
Arg 21-insertion
Ala 22-insertion
Leu 23-insertion
Val 24-insertion
B4, D4: 1 - 97 (UniProt: Q72JR0)
PDBExternal DatabaseDetails
Pro 2-insertion
Leu 3-insertion
Gly 4-insertion
Val 5-insertion
His 6-insertion
Pro 7-insertion
Leu 8-insertion
Tyr 9-insertion
Thr 10-insertion
Lys 11-insertion
Arg 12-insertion
Trp 13-insertion
Leu 14-insertion
Ala 15-insertion
His 16-insertion
Gly 17-insertion
Gln 18-insertion
Asp 19-insertion
Arg 20-insertion
Ala 21-insertion
Lys 22-insertion
Lys 23-insertion
Glu 24-insertion
Ala 25-insertion
Asn 26-insertion
Val 27-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains112
Total formula weight4564324.7
Non-Polymers*Number of molecules2581
Total formula weight62895.6
All*Total formula weight4627220.3
*Water molecules are not included.

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PDB entries from 2025-06-18

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