4V5Z
Structure of a mammalian 80S ribosome obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (AA) | 18S Ribosomal RNA | polymer | 1563 | 504281.3 | 1 | Canis familiaris (dog) | ||
| 2 | B (AB) | RNA Expansion segment ES3 | polymer | 35 | 11182.7 | 1 | Canis familiaris (dog) | ||
| 3 | C (AC) | RNA Expansion segment ES4 | polymer | 32 | 10202.1 | 1 | Canis familiaris (dog) | ||
| 4 | D (AD) | RNA Expansion segment ES6 part I | polymer | 42 | 13476.0 | 1 | Canis familiaris (dog) | ||
| 5 | E (AE) | RNA Expansion segment ES6 part II | polymer | 32 | 10256.1 | 1 | Canis familiaris (dog) | ||
| 6 | F (AF) | RNA Expansion segment ES9 | polymer | 31 | 9916.0 | 1 | Canis familiaris (dog) | ||
| 7 | G (AG) | RNA helix | polymer | 14 | 4539.8 | 1 | Canis familiaris (dog) | ||
| 8 | H (AH) | RNA helix | polymer | 41 | 13335.0 | 1 | Canis familiaris (dog) | ||
| 9 | I (Aa) | 40S Ribosomal protein RACK1 | polymer | 317 | 35115.7 | 1 | Pfam (PF00400) UniProt (by SIFTS) (P63244) | Canis familiaris (dog) | |
| 10 | J (Ab) | 40S Ribosomal protein SA | polymer | 295 | 32914.0 | 1 | Pfam (PF16122) Pfam (PF00318) UniProt (by SIFTS) (P08865) | Canis familiaris (dog) | |
| 11 | K (Ac) | 40S Ribosomal protein S3e | polymer | 243 | 26729.4 | 1 | Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P05750) | Canis familiaris (dog) | |
| 12 | L (Ad) | 40S Ribosomal protein S9e | polymer | 209 | 24373.4 | 1 | Pfam (PF01479) UniProt (by SIFTS) (P0CX35) | Canis familiaris (dog) | |
| 13 | M (Ae) | 40S Ribosomal protein S2e | polymer | 179 | 19397.7 | 1 | Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (P25443) | Canis familiaris (dog) | |
| 14 | N (Ag) | 40S Ribosomal protein S5e | polymer | 204 | 22913.5 | 1 | Pfam (PF00177) UniProt (by SIFTS) (P26783) | Canis familiaris (dog) | |
| 15 | O (Ah) | 40S Ribosomal protein S15ae | polymer | 130 | 14865.6 | 1 | Pfam (PF00410) UniProt (by SIFTS) (P0C0W1) | Canis familiaris (dog) | |
| 16 | P (Ai) | 40S Ribosomal protein S16e | polymer | 146 | 16477.4 | 1 | Pfam (PF00380) UniProt (by SIFTS) (P0CX51) | Canis familiaris (dog) | |
| 17 | Q (Aj) | 40S Ribosomal protein S20e | polymer | 119 | 13398.8 | 1 | Pfam (PF00338) UniProt (by SIFTS) (P38701) | Canis familiaris (dog) | |
| 18 | R (Ak) | 40S Ribosomal protein S14e | polymer | 151 | 16302.8 | 1 | Pfam (PF00411) UniProt (by SIFTS) (P06367) | Canis familiaris (dog) | |
| 19 | S (Al) | 40S Ribosomal protein S23e | polymer | 143 | 15844.7 | 1 | Pfam (PF00164) UniProt (by SIFTS) (P0CX29) | Canis familiaris (dog) | |
| 20 | T (Am) | 40S Ribosomal protein S18e | polymer | 152 | 17759.8 | 1 | Pfam (PF00416) UniProt (by SIFTS) (P0CX55) | Canis familiaris (dog) | |
| 21 | U (An) | 40S Ribosomal protein S29e | polymer | 56 | 6690.8 | 1 | Pfam (PF00253) UniProt (by SIFTS) (P41057) | Canis familiaris (dog) | |
| 22 | V (Ao) | 40S Ribosomal protein S13e | polymer | 89 | 10578.4 | 1 | Pfam (PF00312) UniProt (by SIFTS) (P05756) | Canis familiaris (dog) | |
| 23 | W (Aq) | 40S Ribosomal protein S11e | polymer | 158 | 18468.8 | 1 | Pfam (PF16205) Pfam (PF00366) UniProt (by SIFTS) (P0CX47) | Canis familiaris (dog) | |
| 24 | X (As) | 40S Ribosomal protein S15e | polymer | 145 | 17076.2 | 1 | Pfam (PF00203) UniProt (by SIFTS) (Q01855) | Canis familiaris (dog) | |
| 25 | Y (B1) | 5.8S Ribosomal RNA | polymer | 123 | 39561.5 | 1 | canis familiaris (dog) | ||
| 26 | Z (B0) | 28S Ribosomal RNA | polymer | 2903 | 940211.1 | 1 | canis familiaris (dog) | ||
| 27 | AA (BA) | RNA Expansion segment ES3 | polymer | 21 | 6687.0 | 1 | Canis familiaris (dog) | ||
| 28 | BA (BB) | RNA Expansion segment ES4 | polymer | 27 | 8617.1 | 1 | Canis familiaris (dog) | ||
| 29 | CA (BC) | RNA Expansion segment ES5 | polymer | 17 | 5503.4 | 1 | Canis familiaris (dog) | ||
| 30 | DA (BD) | RNA Expansion segment ES7 part I | polymer | 16 | 5143.1 | 1 | Canis familiaris (dog) | ||
| 31 | EA (BE) | RNA Expansion segment ES7 part II | polymer | 54 | 17440.4 | 1 | Canis familiaris (dog) | ||
| 32 | FA (BF) | RNA Expansion segment ES7 part III | polymer | 120 | 38843.2 | 1 | Canis familiaris (dog) | ||
| 33 | GA (BG) | RNA Expansion segment ES9 | polymer | 48 | 15519.3 | 1 | Canis familiaris (dog) | ||
| 34 | HA (BH) | RNA Expansion segment ES12 | polymer | 25 | 8091.9 | 1 | Canis familiaris (dog) | ||
| 35 | IA (BI) | RNA Expansion segment ES15 part I | polymer | 72 | 23293.9 | 1 | Canis familiaris (dog) | ||
| 36 | JA (BJ) | RNA Expansion segment ES15 part II | polymer | 30 | 9635.8 | 1 | Canis familiaris (dog) | ||
| 37 | KA (BK) | RNA Expansion segment ES19 | polymer | 26 | 8303.0 | 1 | Canis familiaris (dog) | ||
| 38 | LA (BL) | RNA Expansion segment ES20 | polymer | 20 | 6468.9 | 1 | Canis familiaris (dog) | ||
| 39 | MA (BM) | RNA Expansion segment ES24 | polymer | 19 | 6067.7 | 1 | Canis familiaris (dog) | ||
| 40 | NA (BN) | RNA Expansion segment ES27 | polymer | 78 | 25060.9 | 1 | Canis familiaris (dog) | ||
| 41 | OA (BO) | RNA Expansion segment ES30 | polymer | 20 | 6413.9 | 1 | Canis familiaris (dog) | ||
| 42 | PA (BP) | RNA Expansion segment ES31 part I | polymer | 15 | 4862.0 | 1 | Canis familiaris (dog) | ||
| 43 | QA (BQ) | RNA Expansion segment ES31 part II | polymer | 30 | 9671.8 | 1 | Canis familiaris (dog) | ||
| 44 | RA (BR) | RNA Expansion segment ES39 part I | polymer | 30 | 9620.8 | 1 | Canis familiaris (dog) | ||
| 45 | SA (BS) | RNA Expansion segment ES39 part II | polymer | 38 | 12222.3 | 1 | Canis familiaris (dog) | ||
| 46 | TA (BT) | RNA Expansion segment ES39 part III | polymer | 30 | 9635.8 | 1 | Canis familiaris (dog) | ||
| 47 | UA (BU) | RNA Expansion segment ES41 | polymer | 16 | 5025.0 | 1 | Canis familiaris (dog) | ||
| 48 | VA (BV) | RNA Expansion segment ES9 part2 | polymer | 22 | 7064.3 | 1 | Canis familiaris (dog) | ||
| 49 | WA (BW) | RNA Expansion segment ES10 | polymer | 16 | 5128.1 | 1 | Canis familiaris (dog) | ||
| 50 | XA (BX) | RNA helices | polymer | 113 | 36425.7 | 1 | Canis familiaris (dog) | ||
| 51 | YA (BY) | 5S Ribosomal RNA | polymer | 115 | 37085.0 | 1 | Canis familiaris (dog) | ||
| 52 | ZA (BZ) | E site t-RNA | polymer | 72 | 23175.8 | 1 | Canis familiaris (dog) | ||
| 53 | AB (Ba) | 60S Ribosomal protein L8 | polymer | 257 | 28088.9 | 1 | Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P0CX45) | Canis familiaris (dog) | |
| 54 | BB (Bb) | 60S Ribosomal protein L3 | polymer | 403 | 46126.0 | 1 | Pfam (PF00297) UniProt (by SIFTS) (P14126) | Canis familiaris (dog) | |
| 55 | CB (Bc) | 60S Ribosomal protein L4 | polymer | 421 | 47627.6 | 1 | Pfam (PF00573) Pfam (PF14374) UniProt (by SIFTS) (P10664) | Canis familiaris (dog) | |
| 56 | DB (Bd) | 60S Ribosomal protein L11 | polymer | 178 | 20288.5 | 1 | Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (P0C0W9) | Canis familiaris (dog) | |
| 57 | EB (Be) | 60S Ribosomal protein L9 | polymer | 192 | 21899.5 | 1 | Pfam (PF00347) UniProt (by SIFTS) (P05738) | Canis familiaris (dog) | |
| 58 | FB (Bf) | 60S Ribosomal protein L7a | polymer | 266 | 30042.7 | 1 | Pfam (PF01248) UniProt (by SIFTS) (P17076) | Canis familiaris (dog) | |
| 59 | GB (Bg) | 60S acidic ribosomal protein P0 | polymer | 317 | 34309.4 | 1 | Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) UniProt (by SIFTS) (P05317) | Canis familiaris (dog) | |
| 60 | HB (Bh) | 60S Ribosomal protein L10 | polymer | 214 | 24628.1 | 1 | Pfam (PF00252) UniProt (by SIFTS) (P41805) | Canis familiaris (dog) | |
| 61 | IB (Bi) | 60S Ribosomal protein L12 | polymer | 165 | 17847.6 | 1 | Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (P0CX53) | Canis familiaris (dog) | |
| 62 | JB (Bj) | 60S ribosomal protein L13a | polymer | 203 | 23595.3 | 1 | Pfam (PF00572) UniProt (by SIFTS) (P26784) | Canis familiaris (dog) | |
| 63 | KB (Bk) | 60S Ribosomal protein L23 | polymer | 140 | 14892.5 | 1 | Pfam (PF00238) UniProt (by SIFTS) (P0CX41) | Canis familiaris (dog) | |
| 64 | LB (Bl) | 60S Ribosomal protein L27a | polymer | 148 | 16634.6 | 1 | Pfam (PF00828) UniProt (by SIFTS) (P02406) | Canis familiaris (dog) | |
| 65 | MB (Bm) | 60S Ribosomal protein L15e | polymer | 204 | 24207.3 | 1 | Pfam (PF00827) UniProt (by SIFTS) (P05748) | Canis familiaris (dog) | |
| 66 | NB (Bn) | 60S Ribosomal protein L5 | polymer | 297 | 34512.9 | 1 | Pfam (PF17144) Pfam (PF14204) UniProt (by SIFTS) (P26321) | Canis familiaris (dog) | |
| 67 | OB (Bo) | 60S Ribosomal protein L18 | polymer | 188 | 21698.7 | 1 | Pfam (PF17135) UniProt (by SIFTS) (P0CX49) | Canis familiaris (dog) | |
| 68 | PB (Bp) | 60S Ribosomal protein L19 | polymer | 196 | 23535.3 | 1 | Pfam (PF01280) UniProt (by SIFTS) (P0CX82) | Canis familiaris (dog) | |
| 69 | QB (B7) | 60S Ribosomal protein L19 | polymer | 13 | 1865.4 | 1 | UniProt (by SIFTS) (P0CX82) | Canis familiaris (dog) | |
| 70 | RB (Bq) | 60S Ribosomal protein L21 | polymer | 160 | 18608.0 | 1 | Pfam (PF01157) UniProt (by SIFTS) (Q02753) | Canis familiaris (dog) | |
| 71 | SB (Br) | 60S Ribosomal protein L17 | polymer | 184 | 21443.2 | 1 | Pfam (PF00237) UniProt (by SIFTS) (P05740) | Canis familiaris (dog) | |
| 72 | TB (Bs) | 60S Ribosomal protein L23a | polymer | 156 | 17740.2 | 1 | Pfam (PF03939) Pfam (PF00276) UniProt (by SIFTS) (P04456) | Canis familiaris (dog) | |
| 73 | UB (Bt) | 60S Ribosomal protein L26 | polymer | 145 | 17303.4 | 1 | Pfam (PF16906) Pfam (PF00467) UniProt (by SIFTS) (P05743) | Canis familiaris (dog) | |
| 74 | VB (Bu) | 60S Ribosomal protein L24 | polymer | 157 | 17825.1 | 1 | Pfam (PF01246) UniProt (by SIFTS) (P04449) | Canis familiaris (dog) | |
| 75 | WB (Bv) | 60S Ribosomal protein L35 | polymer | 123 | 14593.6 | 1 | Pfam (PF00831) UniProt (by SIFTS) (P0CX84) | Canis familiaris (dog) | |
| 76 | XB (B8) | 60S Ribosomal protein L35 | polymer | 10 | 1115.3 | 1 | UniProt (by SIFTS) (P0CX84) | Canis familiaris (dog) | |
| 77 | YB (Bw) | 60S Ribosomal protein L7 | polymer | 270 | 31492.9 | 1 | Pfam (PF08079) Pfam (PF00327) UniProt (by SIFTS) (P05737) | Canis familiaris (dog) | |
| 78 | ZB (Bx) | 60S Ribosomal protein L31 | polymer | 125 | 14494.9 | 1 | Pfam (PF01198) UniProt (by SIFTS) (P0C2H8) | Canis familiaris (dog) | |
| 79 | AC (By) | 60S Ribosomal protein L32 | polymer | 135 | 15898.9 | 1 | Pfam (PF01655) UniProt (by SIFTS) (P38061) | Canis familiaris (dog) | |
| 80 | BC (B9) | 60S Ribosomal protein L32 | polymer | 58 | 6588.8 | 1 | Pfam (PF01655) UniProt (by SIFTS) (P38061) | Canis familiaris (dog) | |
| 81 | CC (Bz) | 60S Ribosomal protein L37a | polymer | 92 | 10299.4 | 1 | Pfam (PF01780) UniProt (by SIFTS) (P0CX25) | Canis familiaris (dog) | |
| 82 | DC (B2) | 60S Ribosomal protein L37e | polymer | 97 | 11111.0 | 1 | Pfam (PF01907) UniProt (by SIFTS) (P49166) | Canis familiaris (dog) | |
| 83 | EC (B3) | 60S Ribosomal protein L39e | polymer | 51 | 6426.8 | 1 | Pfam (PF00832) UniProt (by SIFTS) (P04650) | Canis familiaris (dog) | |
| 84 | FC (B4) | 60S Ribosomal protein L44e | polymer | 106 | 12477.0 | 1 | Pfam (PF00935) UniProt (by SIFTS) (P0CX27) | Canis familiaris (dog) | |
| 85 | GC (B5) | 60S Ribosomal protein L10a | polymer | 212 | 23376.8 | 1 | Pfam (PF00687) UniProt (by SIFTS) (P0CX43) | Canis familiaris (dog) | |
| 86 | HC (B6) | 60S Ribosomal protein L30e | polymer | 115 | 12805.1 | 1 | Pfam (PF01248) UniProt (by SIFTS) (P14120) | Canis familiaris (dog) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 86 |
| Total formula weight | 2902274.5 | |
| All* | Total formula weight | 2902274.5 |
