4V5Z
Structure of a mammalian 80S ribosome obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AA | 18S Ribosomal RNA | polymer | 1563 | 504281.3 | 1 | Canis familiaris (dog) | ||
2 | AB | RNA Expansion segment ES3 | polymer | 35 | 11182.7 | 1 | Canis familiaris (dog) | ||
3 | AC | RNA Expansion segment ES4 | polymer | 32 | 10202.1 | 1 | Canis familiaris (dog) | ||
4 | AD | RNA Expansion segment ES6 part I | polymer | 42 | 13476.0 | 1 | Canis familiaris (dog) | ||
5 | AE | RNA Expansion segment ES6 part II | polymer | 32 | 10256.1 | 1 | Canis familiaris (dog) | ||
6 | AF | RNA Expansion segment ES9 | polymer | 31 | 9916.0 | 1 | Canis familiaris (dog) | ||
7 | AG | RNA helix | polymer | 14 | 4539.8 | 1 | Canis familiaris (dog) | ||
8 | AH | RNA helix | polymer | 41 | 13335.0 | 1 | Canis familiaris (dog) | ||
9 | Aa | 40S Ribosomal protein RACK1 | polymer | 317 | 35115.7 | 1 | Canis familiaris (dog) | ||
10 | Ab | 40S Ribosomal protein SA | polymer | 295 | 32914.0 | 1 | Canis familiaris (dog) | ||
11 | Ac | 40S Ribosomal protein S3e | polymer | 243 | 26729.4 | 1 | Canis familiaris (dog) | ||
12 | Ad | 40S Ribosomal protein S9e | polymer | 209 | 24373.4 | 1 | Canis familiaris (dog) | ||
13 | Ae | 40S Ribosomal protein S2e | polymer | 179 | 19397.7 | 1 | Canis familiaris (dog) | ||
14 | Ag | 40S Ribosomal protein S5e | polymer | 204 | 22913.5 | 1 | Canis familiaris (dog) | ||
15 | Ah | 40S Ribosomal protein S15ae | polymer | 130 | 14865.6 | 1 | Canis familiaris (dog) | ||
16 | Ai | 40S Ribosomal protein S16e | polymer | 146 | 16477.4 | 1 | Canis familiaris (dog) | ||
17 | Aj | 40S Ribosomal protein S20e | polymer | 119 | 13398.8 | 1 | Canis familiaris (dog) | ||
18 | Ak | 40S Ribosomal protein S14e | polymer | 151 | 16302.8 | 1 | Canis familiaris (dog) | ||
19 | Al | 40S Ribosomal protein S23e | polymer | 143 | 15844.7 | 1 | Canis familiaris (dog) | ||
20 | Am | 40S Ribosomal protein S18e | polymer | 152 | 17759.8 | 1 | Canis familiaris (dog) | ||
21 | An | 40S Ribosomal protein S29e | polymer | 56 | 6690.8 | 1 | Canis familiaris (dog) | ||
22 | Ao | 40S Ribosomal protein S13e | polymer | 89 | 10578.4 | 1 | Canis familiaris (dog) | ||
23 | Aq | 40S Ribosomal protein S11e | polymer | 158 | 18468.8 | 1 | Canis familiaris (dog) | ||
24 | As | 40S Ribosomal protein S15e | polymer | 145 | 17076.2 | 1 | Canis familiaris (dog) | ||
25 | B1 | 5.8S Ribosomal RNA | polymer | 123 | 39561.5 | 1 | canis familiaris (dog) | ||
26 | B0 | 28S Ribosomal RNA | polymer | 2903 | 940211.1 | 1 | canis familiaris (dog) | ||
27 | BA | RNA Expansion segment ES3 | polymer | 21 | 6687.0 | 1 | Canis familiaris (dog) | ||
28 | BB | RNA Expansion segment ES4 | polymer | 27 | 8617.1 | 1 | Canis familiaris (dog) | ||
29 | BC | RNA Expansion segment ES5 | polymer | 17 | 5503.4 | 1 | Canis familiaris (dog) | ||
30 | BD | RNA Expansion segment ES7 part I | polymer | 16 | 5143.1 | 1 | Canis familiaris (dog) | ||
31 | BE | RNA Expansion segment ES7 part II | polymer | 54 | 17440.4 | 1 | Canis familiaris (dog) | ||
32 | BF | RNA Expansion segment ES7 part III | polymer | 120 | 38843.2 | 1 | Canis familiaris (dog) | ||
33 | BG | RNA Expansion segment ES9 | polymer | 48 | 15519.3 | 1 | Canis familiaris (dog) | ||
34 | BH | RNA Expansion segment ES12 | polymer | 25 | 8091.9 | 1 | Canis familiaris (dog) | ||
35 | BI | RNA Expansion segment ES15 part I | polymer | 72 | 23293.9 | 1 | Canis familiaris (dog) | ||
36 | BJ | RNA Expansion segment ES15 part II | polymer | 30 | 9635.8 | 1 | Canis familiaris (dog) | ||
37 | BK | RNA Expansion segment ES19 | polymer | 26 | 8303.0 | 1 | Canis familiaris (dog) | ||
38 | BL | RNA Expansion segment ES20 | polymer | 20 | 6468.9 | 1 | Canis familiaris (dog) | ||
39 | BM | RNA Expansion segment ES24 | polymer | 19 | 6067.7 | 1 | Canis familiaris (dog) | ||
40 | BN | RNA Expansion segment ES27 | polymer | 78 | 25060.9 | 1 | Canis familiaris (dog) | ||
41 | BO | RNA Expansion segment ES30 | polymer | 20 | 6413.9 | 1 | Canis familiaris (dog) | ||
42 | BP | RNA Expansion segment ES31 part I | polymer | 15 | 4862.0 | 1 | Canis familiaris (dog) | ||
43 | BQ | RNA Expansion segment ES31 part II | polymer | 30 | 9671.8 | 1 | Canis familiaris (dog) | ||
44 | BR | RNA Expansion segment ES39 part I | polymer | 30 | 9620.8 | 1 | Canis familiaris (dog) | ||
45 | BS | RNA Expansion segment ES39 part II | polymer | 38 | 12222.3 | 1 | Canis familiaris (dog) | ||
46 | BT | RNA Expansion segment ES39 part III | polymer | 30 | 9635.8 | 1 | Canis familiaris (dog) | ||
47 | BU | RNA Expansion segment ES41 | polymer | 16 | 5025.0 | 1 | Canis familiaris (dog) | ||
48 | BV | RNA Expansion segment ES9 part2 | polymer | 22 | 7064.3 | 1 | Canis familiaris (dog) | ||
49 | BW | RNA Expansion segment ES10 | polymer | 16 | 5128.1 | 1 | Canis familiaris (dog) | ||
50 | BX | RNA helices | polymer | 113 | 36425.7 | 1 | Canis familiaris (dog) | ||
51 | BY | 5S Ribosomal RNA | polymer | 115 | 37085.0 | 1 | Canis familiaris (dog) | ||
52 | BZ | E site t-RNA | polymer | 72 | 23175.8 | 1 | Canis familiaris (dog) | ||
53 | Ba | 60S Ribosomal protein L8 | polymer | 257 | 28088.9 | 1 | Canis familiaris (dog) | ||
54 | Bb | 60S Ribosomal protein L3 | polymer | 403 | 46126.0 | 1 | Canis familiaris (dog) | ||
55 | Bc | 60S Ribosomal protein L4 | polymer | 421 | 47627.6 | 1 | Canis familiaris (dog) | ||
56 | Bd | 60S Ribosomal protein L11 | polymer | 178 | 20288.5 | 1 | Canis familiaris (dog) | ||
57 | Be | 60S Ribosomal protein L9 | polymer | 192 | 21899.5 | 1 | Canis familiaris (dog) | ||
58 | Bf | 60S Ribosomal protein L7a | polymer | 266 | 30042.7 | 1 | Canis familiaris (dog) | ||
59 | Bg | 60S acidic ribosomal protein P0 | polymer | 317 | 34309.4 | 1 | Canis familiaris (dog) | ||
60 | Bh | 60S Ribosomal protein L10 | polymer | 214 | 24628.1 | 1 | Canis familiaris (dog) | ||
61 | Bi | 60S Ribosomal protein L12 | polymer | 165 | 17847.6 | 1 | Canis familiaris (dog) | ||
62 | Bj | 60S ribosomal protein L13a | polymer | 203 | 23595.3 | 1 | Canis familiaris (dog) | ||
63 | Bk | 60S Ribosomal protein L23 | polymer | 140 | 14892.5 | 1 | Canis familiaris (dog) | ||
64 | Bl | 60S Ribosomal protein L27a | polymer | 148 | 16634.6 | 1 | Canis familiaris (dog) | ||
65 | Bm | 60S Ribosomal protein L15e | polymer | 204 | 24207.3 | 1 | Canis familiaris (dog) | ||
66 | Bn | 60S Ribosomal protein L5 | polymer | 297 | 34512.9 | 1 | Canis familiaris (dog) | ||
67 | Bo | 60S Ribosomal protein L18 | polymer | 188 | 21698.7 | 1 | Canis familiaris (dog) | ||
68 | Bp | 60S Ribosomal protein L19 | polymer | 196 | 23535.3 | 1 | Canis familiaris (dog) | ||
69 | B7 | 60S Ribosomal protein L19 | polymer | 13 | 1865.4 | 1 | Canis familiaris (dog) | ||
70 | Bq | 60S Ribosomal protein L21 | polymer | 160 | 18608.0 | 1 | Canis familiaris (dog) | ||
71 | Br | 60S Ribosomal protein L17 | polymer | 184 | 21443.2 | 1 | Canis familiaris (dog) | ||
72 | Bs | 60S Ribosomal protein L23a | polymer | 156 | 17740.2 | 1 | Canis familiaris (dog) | ||
73 | Bt | 60S Ribosomal protein L26 | polymer | 145 | 17303.4 | 1 | Canis familiaris (dog) | ||
74 | Bu | 60S Ribosomal protein L24 | polymer | 157 | 17825.1 | 1 | Canis familiaris (dog) | ||
75 | Bv | 60S Ribosomal protein L35 | polymer | 123 | 14593.6 | 1 | Canis familiaris (dog) | ||
76 | B8 | 60S Ribosomal protein L35 | polymer | 10 | 1115.3 | 1 | Canis familiaris (dog) | ||
77 | Bw | 60S Ribosomal protein L7 | polymer | 270 | 31492.9 | 1 | Canis familiaris (dog) | ||
78 | Bx | 60S Ribosomal protein L31 | polymer | 125 | 14494.9 | 1 | Canis familiaris (dog) | ||
79 | By | 60S Ribosomal protein L32 | polymer | 135 | 15898.9 | 1 | Canis familiaris (dog) | ||
80 | B9 | 60S Ribosomal protein L32 | polymer | 58 | 6588.8 | 1 | Canis familiaris (dog) | ||
81 | Bz | 60S Ribosomal protein L37a | polymer | 92 | 10299.4 | 1 | Canis familiaris (dog) | ||
82 | B2 | 60S Ribosomal protein L37e | polymer | 97 | 11111.0 | 1 | Canis familiaris (dog) | ||
83 | B3 | 60S Ribosomal protein L39e | polymer | 51 | 6426.8 | 1 | Canis familiaris (dog) | ||
84 | B4 | 60S Ribosomal protein L44e | polymer | 106 | 12477.0 | 1 | Canis familiaris (dog) | ||
85 | B5 | 60S Ribosomal protein L10a | polymer | 212 | 23376.8 | 1 | Canis familiaris (dog) | ||
86 | B6 | 60S Ribosomal protein L30e | polymer | 115 | 12805.1 | 1 | Canis familiaris (dog) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 86 |
Total formula weight | 2902274.5 | |
All* | Total formula weight | 2902274.5 |