Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4V5X

The cryo-EM structure of a 3D DNA-origami object

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (AA)	SCAFFOLD STRAND,SCAFFOLD STRAND	polymer	7249	2236529.5	1		ENTEROBACTERIA PHAGE M13 (M13 PHAGE)
2	B (A0)	STAPLE STRAND	polymer	55	17040.0	1		SYNTHETIC CONSTRUCT
3	C (A1)	STAPLE STRAND	polymer	44	13578.8	1		SYNTHETIC CONSTRUCT
4	D (A2)	STAPLE STRAND	polymer	50	15511.1	1		SYNTHETIC CONSTRUCT
5	E (A3)	STAPLE STRAND	polymer	40	12230.9	1		SYNTHETIC CONSTRUCT
6	F (A4)	STAPLE STRAND	polymer	48	14807.6	1		SYNTHETIC CONSTRUCT
7	G (A5)	STAPLE STRAND	polymer	48	14780.6	1		SYNTHETIC CONSTRUCT
8	H (A6)	STAPLE STRAND	polymer	50	15465.0	1		SYNTHETIC CONSTRUCT
9	I (A7)	STAPLE STRAND	polymer	48	14646.4	1		SYNTHETIC CONSTRUCT
10	J (A8)	STAPLE STRAND	polymer	48	14915.6	1		SYNTHETIC CONSTRUCT
11	K (AB)	STAPLE STRAND	polymer	40	12142.8	1		SYNTHETIC CONSTRUCT
12	L (AC)	STAPLE STRAND	polymer	48	15050.7	1		SYNTHETIC CONSTRUCT
13	M (AD)	STAPLE STRAND	polymer	50	15408.9	1		SYNTHETIC CONSTRUCT
14	N (AE)	STAPLE STRAND	polymer	46	14141.1	1		SYNTHETIC CONSTRUCT
15	O (AF)	STAPLE STRAND	polymer	48	14669.4	1		SYNTHETIC CONSTRUCT
16	P (AG)	STAPLE STRAND	polymer	46	14206.2	1		SYNTHETIC CONSTRUCT
17	Q (AH)	STAPLE STRAND	polymer	48	14627.4	1		SYNTHETIC CONSTRUCT
18	R (AI)	STAPLE STRAND	polymer	48	14811.6	1		SYNTHETIC CONSTRUCT
19	S (AJ)	STAPLE STRAND	polymer	52	16067.4	1		SYNTHETIC CONSTRUCT
20	T (AK)	STAPLE STRAND	polymer	60	18479.9	1		SYNTHETIC CONSTRUCT
21	U (AL)	STAPLE STRAND	polymer	48	14739.5	1		SYNTHETIC CONSTRUCT
22	V (AM)	STAPLE STRAND	polymer	50	15255.8	1		SYNTHETIC CONSTRUCT
23	W (AN)	STAPLE STRAND	polymer	48	14723.5	1		SYNTHETIC CONSTRUCT
24	X (AO)	STAPLE STRAND	polymer	48	14647.4	1		SYNTHETIC CONSTRUCT
25	Y (AP)	STAPLE STRAND	polymer	40	12225.9	1		SYNTHETIC CONSTRUCT
26	Z (AQ)	STAPLE STRAND	polymer	57	17719.3	1		SYNTHETIC CONSTRUCT
27	AA (AR)	STAPLE STRAND	polymer	63	19372.4	1		SYNTHETIC CONSTRUCT
28	BA (AS)	STAPLE STRAND	polymer	64	19698.7	1		SYNTHETIC CONSTRUCT
29	CA (AT)	STAPLE STRAND	polymer	48	14866.6	1		SYNTHETIC CONSTRUCT
30	DA (AU)	STAPLE STRAND	polymer	48	14811.6	1		SYNTHETIC CONSTRUCT
31	EA (AV)	STAPLE STRAND	polymer	52	16044.4	1		SYNTHETIC CONSTRUCT
32	FA (AW)	STAPLE STRAND	polymer	50	15186.8	1		SYNTHETIC CONSTRUCT
33	GA (AX)	STAPLE STRAND	polymer	48	14668.5	1		SYNTHETIC CONSTRUCT
34	HA (AY)	STAPLE STRAND	polymer	42	12847.2	1		SYNTHETIC CONSTRUCT
35	IA (AZ)	STAPLE STRAND	polymer	54	16569.7	1		SYNTHETIC CONSTRUCT
36	JA (Ab)	STAPLE STRAND	polymer	45	13844.9	1		SYNTHETIC CONSTRUCT
37	KA (Ac)	STAPLE STRAND	polymer	70	21594.9	1		SYNTHETIC CONSTRUCT
38	LA (Ad)	STAPLE STRAND	polymer	48	14677.4	1		SYNTHETIC CONSTRUCT
39	MA (Af)	STAPLE STRAND	polymer	48	14724.5	1		SYNTHETIC CONSTRUCT
40	NA (Ag)	STAPLE STRAND	polymer	48	14873.5	1		SYNTHETIC CONSTRUCT
41	OA (Ah)	STAPLE STRAND	polymer	44	13352.6	1		SYNTHETIC CONSTRUCT
42	PA (Ai)	STAPLE STRAND	polymer	46	14051.0	1		SYNTHETIC CONSTRUCT
43	QA (Aj)	STAPLE STRAND	polymer	62	19167.4	1		SYNTHETIC CONSTRUCT
44	RA (Ak)	STAPLE STRAND	polymer	46	14427.3	1		SYNTHETIC CONSTRUCT
45	SA (Al)	STAPLE STRAND	polymer	48	14603.4	1		SYNTHETIC CONSTRUCT
46	TA (Am)	STAPLE STRAND	polymer	48	14738.5	1		SYNTHETIC CONSTRUCT
47	UA (An)	STAPLE STRAND	polymer	48	14783.5	1		SYNTHETIC CONSTRUCT
48	VA (Ao)	STAPLE STRAND	polymer	36	11088.1	1		SYNTHETIC CONSTRUCT
49	WA (As)	STAPLE STRAND	polymer	48	14856.6	1		SYNTHETIC CONSTRUCT
50	XA (Au)	STAPLE STRAND	polymer	48	14668.4	1		SYNTHETIC CONSTRUCT
51	YA (Av)	STAPLE STRAND	polymer	48	14776.5	1		SYNTHETIC CONSTRUCT
52	ZA (Aw)	STAPLE STRAND	polymer	48	14700.5	1		SYNTHETIC CONSTRUCT
53	AB (Ax)	STAPLE STRAND	polymer	52	16015.3	1		SYNTHETIC CONSTRUCT
54	BB (Ay)	STAPLE STRAND	polymer	38	11672.5	1		SYNTHETIC CONSTRUCT
55	CB (Az)	STAPLE STRAND	polymer	51	15777.1	1		SYNTHETIC CONSTRUCT
56	DB (B0)	STAPLE STRAND	polymer	48	14858.5	1		SYNTHETIC CONSTRUCT
57	EB (B1)	STAPLE STRAND	polymer	59	18217.7	1		SYNTHETIC CONSTRUCT
58	FB (B2)	STAPLE STRAND	polymer	36	11130.2	1		SYNTHETIC CONSTRUCT
59	GB (B3)	STAPLE STRAND	polymer	48	14792.5	1		SYNTHETIC CONSTRUCT
60	HB (B4)	STAPLE STRAND	polymer	48	14648.4	1		SYNTHETIC CONSTRUCT
61	IB (B5)	STAPLE STRAND	polymer	40	12363.0	1		SYNTHETIC CONSTRUCT
62	JB (B6)	STAPLE STRAND	polymer	50	15522.0	1		SYNTHETIC CONSTRUCT
63	KB (B7)	STAPLE STRAND	polymer	44	13550.7	1		SYNTHETIC CONSTRUCT
64	LB (B8)	STAPLE STRAND	polymer	40	12030.8	1		SYNTHETIC CONSTRUCT
65	MB (B9)	STAPLE STRAND	polymer	55	16897.9	1		SYNTHETIC CONSTRUCT
66	NB (BB)	STAPLE STRAND	polymer	48	14819.6	1		SYNTHETIC CONSTRUCT
67	OB (BC)	STAPLE STRAND	polymer	44	13567.8	1		SYNTHETIC CONSTRUCT
68	PB (BD)	STAPLE STRAND	polymer	35	10961.1	1		SYNTHETIC CONSTRUCT
69	QB (BE)	STAPLE STRAND	polymer	68	20973.5	1		SYNTHETIC CONSTRUCT
70	RB (BF)	STAPLE STRAND	polymer	40	12299.0	1		SYNTHETIC CONSTRUCT
71	SB (BG)	STAPLE STRAND	polymer	49	15221.8	1		SYNTHETIC CONSTRUCT
72	TB (BH)	STAPLE STRAND	polymer	42	12828.3	1		SYNTHETIC CONSTRUCT
73	UB (BI)	STAPLE STRAND	polymer	42	12823.3	1		SYNTHETIC CONSTRUCT
74	VB (BJ)	STAPLE STRAND	polymer	58	17870.4	1		SYNTHETIC CONSTRUCT
75	WB (BK)	STAPLE STRAND	polymer	44	13573.8	1		SYNTHETIC CONSTRUCT
76	XB (BL)	STAPLE STRAND	polymer	48	14710.4	1		SYNTHETIC CONSTRUCT
77	YB (BM)	STAPLE STRAND	polymer	52	16003.3	1		SYNTHETIC CONSTRUCT
78	ZB (BN)	STAPLE STRAND	polymer	63	19274.4	1		SYNTHETIC CONSTRUCT
79	AC (BO)	STAPLE STRAND	polymer	49	14948.6	1		SYNTHETIC CONSTRUCT
80	BC (BP)	STAPLE STRAND	polymer	66	20124.9	1		SYNTHETIC CONSTRUCT
81	CC (BQ)	STAPLE STRAND	polymer	48	14687.5	1		SYNTHETIC CONSTRUCT
82	DC (BR)	STAPLE STRAND	polymer	64	19689.6	1		SYNTHETIC CONSTRUCT
83	EC (BS)	STAPLE STRAND	polymer	48	14721.4	1		SYNTHETIC CONSTRUCT
84	FC (BT)	STAPLE STRAND	polymer	52	15960.2	1		SYNTHETIC CONSTRUCT
85	GC (BU)	STAPLE STRAND	polymer	55	16950.9	1		SYNTHETIC CONSTRUCT
86	HC (BV)	STAPLE STRAND	polymer	44	13490.7	1		SYNTHETIC CONSTRUCT
87	IC (BW)	STAPLE STRAND	polymer	53	16259.4	1		SYNTHETIC CONSTRUCT
88	JC (BX)	STAPLE STRAND	polymer	48	15029.7	1		SYNTHETIC CONSTRUCT
89	KC (BY)	STAPLE STRAND	polymer	48	14731.5	1		SYNTHETIC CONSTRUCT
90	LC (BZ)	STAPLE STRAND	polymer	66	20186.0	1		SYNTHETIC CONSTRUCT
91	MC (Ba)	STAPLE STRAND	polymer	48	14797.5	1		SYNTHETIC CONSTRUCT
92	NC (Bb)	STAPLE STRAND	polymer	68	20881.4	1		SYNTHETIC CONSTRUCT
93	OC (Bc)	STAPLE STRAND	polymer	50	15441.9	1		SYNTHETIC CONSTRUCT
94	PC (Bd)	STAPLE STRAND	polymer	56	17205.0	1		SYNTHETIC CONSTRUCT
95	QC (Be)	STAPLE STRAND	polymer	48	14825.5	1		SYNTHETIC CONSTRUCT
96	RC (Bf)	STAPLE STRAND	polymer	48	14900.5	1		SYNTHETIC CONSTRUCT
97	SC (Bg)	STAPLE STRAND	polymer	47	14388.2	1		SYNTHETIC CONSTRUCT
98	TC (Bh)	STAPLE STRAND	polymer	48	14887.5	1		SYNTHETIC CONSTRUCT
99	UC (Bi)	STAPLE STRAND	polymer	67	20567.2	1		SYNTHETIC CONSTRUCT
100	VC (Bj)	STAPLE STRAND	polymer	45	13759.9	1		SYNTHETIC CONSTRUCT
101	WC (Bk)	STAPLE STRAND	polymer	67	20663.3	1		SYNTHETIC CONSTRUCT
102	XC (Bl)	STAPLE STRAND	polymer	48	14911.6	1		SYNTHETIC CONSTRUCT
103	YC (Bm)	STAPLE STRAND	polymer	48	14672.4	1		SYNTHETIC CONSTRUCT
104	ZC (Bn)	STAPLE STRAND	polymer	67	20798.2	1		SYNTHETIC CONSTRUCT
105	AD (Bo)	STAPLE STRAND	polymer	67	20573.1	1		SYNTHETIC CONSTRUCT
106	BD (Bp)	STAPLE STRAND	polymer	48	14902.6	1		SYNTHETIC CONSTRUCT
107	CD (Bq)	STAPLE STRAND	polymer	58	18002.5	1		SYNTHETIC CONSTRUCT
108	DD (Br)	STAPLE STRAND	polymer	51	15694.0	1		SYNTHETIC CONSTRUCT
109	ED (Bs)	STAPLE STRAND	polymer	54	16673.7	1		SYNTHETIC CONSTRUCT
110	FD (C0)	STAPLE STRAND	polymer	41	12603.1	1		SYNTHETIC CONSTRUCT
111	GD (C1)	STAPLE STRAND	polymer	51	15650.1	1		SYNTHETIC CONSTRUCT
112	HD (C2)	STAPLE STRAND	polymer	56	17173.1	1		SYNTHETIC CONSTRUCT
113	ID (C3)	STAPLE STRAND	polymer	48	14633.5	1		SYNTHETIC CONSTRUCT
114	JD (C4)	STAPLE STRAND	polymer	71	21769.0	1		SYNTHETIC CONSTRUCT
115	KD (C5)	STAPLE STRAND	polymer	62	19270.4	1		SYNTHETIC CONSTRUCT
116	LD (C6)	STAPLE STRAND	polymer	48	14873.6	1		SYNTHETIC CONSTRUCT
117	MD (C7)	STAPLE STRAND	polymer	52	16051.4	1		SYNTHETIC CONSTRUCT
118	ND (C8)	STAPLE STRAND	polymer	44	13617.8	1		SYNTHETIC CONSTRUCT
119	OD (CB)	STAPLE STRAND	polymer	54	16552.6	1		SYNTHETIC CONSTRUCT
120	PD (CC)	STAPLE STRAND	polymer	47	14576.4	1		SYNTHETIC CONSTRUCT
121	QD (CD)	STAPLE STRAND	polymer	48	14929.6	1		SYNTHETIC CONSTRUCT
122	RD (CE)	STAPLE STRAND	polymer	40	12401.0	1		SYNTHETIC CONSTRUCT
123	SD (CF)	STAPLE STRAND	polymer	40	12351.0	1		SYNTHETIC CONSTRUCT
124	TD (CG)	STAPLE STRAND	polymer	44	13706.8	1		SYNTHETIC CONSTRUCT
125	UD (CH)	STAPLE STRAND	polymer	48	14949.6	1		SYNTHETIC CONSTRUCT
126	VD (CI)	STAPLE STRAND	polymer	44	13565.7	1		SYNTHETIC CONSTRUCT
127	WD (CJ)	STAPLE STRAND	polymer	59	18067.7	1		SYNTHETIC CONSTRUCT
128	XD (CK)	STAPLE STRAND	polymer	48	14922.6	1		SYNTHETIC CONSTRUCT
129	YD (CL)	STAPLE STRAND	polymer	48	14789.5	1		SYNTHETIC CONSTRUCT
130	ZD (CM)	STAPLE STRAND	polymer	54	16638.7	1		SYNTHETIC CONSTRUCT
131	AE (CN)	STAPLE STRAND	polymer	41	12745.3	1		SYNTHETIC CONSTRUCT
132	BE (CO)	STAPLE STRAND	polymer	48	14860.6	1		SYNTHETIC CONSTRUCT
133	CE (CP)	STAPLE STRAND	polymer	56	17217.1	1		SYNTHETIC CONSTRUCT
134	DE (CQ)	STAPLE STRAND	polymer	38	11567.5	1		SYNTHETIC CONSTRUCT
135	EE (CR)	STAPLE STRAND	polymer	48	14660.5	1		SYNTHETIC CONSTRUCT
136	FE (CS)	STAPLE STRAND	polymer	48	14767.5	1		SYNTHETIC CONSTRUCT
137	GE (CT)	STAPLE STRAND	polymer	48	14951.6	1		SYNTHETIC CONSTRUCT
138	HE (CU)	STAPLE STRAND	polymer	32	9754.4	1		SYNTHETIC CONSTRUCT
139	IE (CV)	STAPLE STRAND	polymer	53	16271.5	1		SYNTHETIC CONSTRUCT
140	JE (CW)	STAPLE STRAND	polymer	38	11708.5	1		SYNTHETIC CONSTRUCT
141	KE (CX)	STAPLE STRAND	polymer	47	14417.2	1		SYNTHETIC CONSTRUCT
142	LE (CY)	STAPLE STRAND	polymer	43	13206.6	1		SYNTHETIC CONSTRUCT
143	ME (CZ)	STAPLE STRAND	polymer	48	14907.7	1		SYNTHETIC CONSTRUCT
144	NE (Cb)	STAPLE STRAND	polymer	44	13626.8	1		SYNTHETIC CONSTRUCT
145	OE (Cc)	STAPLE STRAND	polymer	62	19047.2	1		SYNTHETIC CONSTRUCT
146	PE (Cd)	STAPLE STRAND	polymer	42	12966.4	1		SYNTHETIC CONSTRUCT
147	QE (Ce)	STAPLE STRAND	polymer	52	16020.3	1		SYNTHETIC CONSTRUCT
148	RE (Cf)	STAPLE STRAND	polymer	48	14770.5	1		SYNTHETIC CONSTRUCT
149	SE (Cg)	STAPLE STRAND	polymer	46	14218.2	1		SYNTHETIC CONSTRUCT
150	TE (Ch)	STAPLE STRAND	polymer	47	14330.2	1		SYNTHETIC CONSTRUCT
151	UE (Ck)	STAPLE STRAND	polymer	29	8874.7	1		SYNTHETIC CONSTRUCT
152	VE (Cp)	STAPLE STRAND	polymer	48	14865.6	1		SYNTHETIC CONSTRUCT
153	WE (Cq)	STAPLE STRAND	polymer	40	12440.0	1		SYNTHETIC CONSTRUCT
154	XE (Cr)	STAPLE STRAND	polymer	46	14115.1	1		SYNTHETIC CONSTRUCT
155	YE (Cs)	STAPLE STRAND	polymer	49	15330.9	1		SYNTHETIC CONSTRUCT
156	ZE (Ct)	STAPLE STRAND	polymer	44	13488.7	1		SYNTHETIC CONSTRUCT
157	AF (Cu)	STAPLE STRAND	polymer	60	18510.0	1		SYNTHETIC CONSTRUCT
158	BF (Cv)	STAPLE STRAND	polymer	46	14077.1	1		SYNTHETIC CONSTRUCT
159	CF (Cw)	STAPLE STRAND	polymer	54	16704.7	1		SYNTHETIC CONSTRUCT
160	DF (Cx)	STAPLE STRAND	polymer	46	14153.1	1		SYNTHETIC CONSTRUCT
161	EF (Cy)	STAPLE STRAND	polymer	66	20481.2	1		SYNTHETIC CONSTRUCT
162	FF (Cz)	STAPLE STRAND	polymer	48	14727.5	1		SYNTHETIC CONSTRUCT

Sequence modifications

AA: 1 - 4896 (PDB: 4V5X)
AA: 4897 - 7249 (PDB: 4V5X)

Sequence viewer

Contents of the asymmetric unit

Polymers	Number of chains	162
Polymers	Total formula weight	4692024.3
All*	Total formula weight	4692024.3

*Water molecules are not included.

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)