4V5F

The structure of the ribosome with elongation factor G trapped in the post-translocational state

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, KB (AA, CA)	16S ribosomal RNA	polymer	1522	493958.3	2	GenBank (55979969)	THERMUS THERMOPHILUS
2	B, LB (AB, CB)	30S RIBOSOMAL PROTEIN S2	polymer	256	29317.7	2	UniProt (P80371) Pfam (PF00318)	THERMUS THERMOPHILUS
3	C, MB (AC, CC)	30S RIBOSOMAL PROTEIN S3	polymer	239	26751.1	2	UniProt (P80372) Pfam (PF07650) Pfam (PF00189)	THERMUS THERMOPHILUS
4	D, NB (AD, CD)	30S RIBOSOMAL PROTEIN S4	polymer	209	24373.4	2	UniProt (P80373) Pfam (PF00163) Pfam (PF01479)	THERMUS THERMOPHILUS
5	E, OB (AE, CE)	30S RIBOSOMAL PROTEIN S5	polymer	162	17583.4	2	UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719)	THERMUS THERMOPHILUS
6	F, PB (AF, CF)	30S RIBOSOMAL PROTEIN S6	polymer	101	11988.8	2	UniProt (Q5SLP8) Pfam (PF01250)	THERMUS THERMOPHILUS	TS9
7	G, QB (AG, CG)	30S RIBOSOMAL PROTEIN S7	polymer	156	18051.0	2	UniProt (P17291) Pfam (PF00177)	THERMUS THERMOPHILUS
8	H, RB (AH, CH)	30S RIBOSOMAL PROTEIN S8	polymer	138	15868.6	2	UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9)	THERMUS THERMOPHILUS
9	I, SB (AI, CI)	30S RIBOSOMAL PROTEIN S9	polymer	128	14410.6	2	UniProt (P80374) Pfam (PF00380)	THERMUS THERMOPHILUS
10	J, TB (AJ, CJ)	30S RIBOSOMAL PROTEIN S10	polymer	105	11955.0	2	UniProt (Q5SHN7) Pfam (PF00338)	THERMUS THERMOPHILUS
11	K, UB (AK, CK)	30S RIBOSOMAL PROTEIN S11	polymer	129	13737.9	2	UniProt (P80376) Pfam (PF00411)	THERMUS THERMOPHILUS
12	L, VB (AL, CL)	30S RIBOSOMAL PROTEIN S12	polymer	132	14637.4	2	UniProt (Q5SHN3) Pfam (PF00164)	THERMUS THERMOPHILUS
13	M, WB (AM, CM)	30S RIBOSOMAL PROTEIN S13	polymer	126	14338.9	2	UniProt (P80377) Pfam (PF00416)	THERMUS THERMOPHILUS
14	N, XB (AN, CN)	30S RIBOSOMAL PROTEIN S14 TYPE Z	polymer	61	7158.7	2	UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6)	THERMUS THERMOPHILUS
15	O, YB (AO, CO)	30S RIBOSOMAL PROTEIN S15	polymer	89	10578.4	2	UniProt (Q5SJ76) Pfam (PF00312)	THERMUS THERMOPHILUS
16	P, ZB (AP, CP)	30S RIBOSOMAL PROTEIN S16	polymer	88	10410.0	2	UniProt (Q5SJH3) Pfam (PF00886)	THERMUS THERMOPHILUS
17	AC, Q (AQ, CQ)	30S RIBOSOMAL PROTEIN S17	polymer	105	12325.7	2	UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7)	THERMUS THERMOPHILUS
18	BC, R (AR, CR)	30S RIBOSOMAL PROTEIN S18	polymer	88	10258.3	2	UniProt (Q5SLQ0) Pfam (PF01084)	THERMUS THERMOPHILUS
19	CC, S (AS, CS)	30S RIBOSOMAL PROTEIN S19	polymer	93	10605.5	2	UniProt (Q5SHP2) Pfam (PF00203)	THERMUS THERMOPHILUS
20	DC, T (AT, CT)	30S RIBOSOMAL PROTEIN S20	polymer	106	11736.1	2	UniProt (P80380) Pfam (PF01649)	THERMUS THERMOPHILUS
21	EC, U (AU, CU)	30S RIBOSOMAL PROTEIN THX	polymer	27	3350.0	2	UniProt (Q5SIH3) Pfam (PF17070)	THERMUS THERMOPHILUS	S31
22	FC, GC, V, W (AV, AW, CV, CW)	E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)	polymer	77	24816.8	4		ESCHERICHIA COLI
23	HC, X (AX, CX)	MRNA	polymer	25	8157.0	2		synthetic construct
24	IC, Y (AY, CY)	ELONGATION FACTOR G	polymer	691	76977.1	2	UniProt (Q5SHN5) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679)	THERMUS THERMOPHILUS	EF-G
25	JC, Z (B0, D0)	50S RIBOSOMAL PROTEIN L27	polymer	85	9529.1	2	UniProt (P60493) Pfam (PF01016)	THERMUS THERMOPHILUS
26	AA, KC (B1, D1)	50S RIBOSOMAL PROTEIN L28	polymer	98	11004.2	2	UniProt (P60494) Pfam (PF00830)	THERMUS THERMOPHILUS
27	BA, LC (B2, D2)	50S RIBOSOMAL PROTEIN L29	polymer	72	8670.3	2	UniProt (Q5SHP6) Pfam (PF00831)	THERMUS THERMOPHILUS	TL5
28	CA, MC (B3, D3)	50S RIBOSOMAL PROTEIN L30	polymer	60	6799.1	2	UniProt (Q5SHQ6) Pfam (PF00327)	THERMUS THERMOPHILUS
29	DA, NC (B4, D4)	50S RIBOSOMAL PROTEIN L31	polymer	71	8300.5	2	UniProt (Q5SJE1) Pfam (PF01197)	THERMUS THERMOPHILUS
30	EA, OC (B5, D5)	50S RIBOSOMAL PROTEIN L32	polymer	60	6722.1	2	UniProt (P80339) Pfam (PF01783)	THERMUS THERMOPHILUS
31	FA, PC (B6, D6)	50S RIBOSOMAL PROTEIN L33	polymer	54	6632.9	2	UniProt (P35871) Pfam (PF00471)	THERMUS THERMOPHILUS
32	GA, QC (B7, D7)	50S RIBOSOMAL PROTEIN L34	polymer	49	6132.4	2	UniProt (P80340) Pfam (PF00468)	THERMUS THERMOPHILUS
33	HA, RC (B8, D8)	50S RIBOSOMAL PROTEIN L35	polymer	65	7506.2	2	UniProt (Q5SKU1) Pfam (PF01632)	THERMUS THERMOPHILUS
34	IA, SC (B9, D9)	50S RIBOSOMAL PROTEIN L36	polymer	37	4435.4	2	UniProt (Q5SHR2) Pfam (PF00444)	THERMUS THERMOPHILUS	RIBOSOMAL PROTEIN B
35	JA, TC (BA, DA)	23S RIBOSOMAL RNA	polymer	2915	947935.4	2	GenBank (55979969)	THERMUS THERMOPHILUS
36	KA, UC (BB, DB)	5S RIBOSOMAL RNA	polymer	122	39540.6	2	GenBank (55979969)	THERMUS THERMOPHILUS
37	LA, VC (BC, DC)	50S RIBOSOMAL PROTEIN L1	polymer	229	24872.7	2	UniProt (Q5SLP7) Pfam (PF00687)	THERMUS THERMOPHILUS
38	MA, WC (BD, DD)	50S RIBOSOMAL PROTEIN L2	polymer	276	30532.6	2	UniProt (P60405) Pfam (PF00181) Pfam (PF03947)	THERMUS THERMOPHILUS
39	NA, XC (BE, DE)	50S RIBOSOMAL PROTEIN L3	polymer	206	22450.2	2	UniProt (Q5SHN8) Pfam (PF00297)	THERMUS THERMOPHILUS
40	OA, YC (BF, DF)	50S RIBOSOMAL PROTEIN L4	polymer	210	23271.9	2	UniProt (Q5SHN9) Pfam (PF00573)	THERMUS THERMOPHILUS	L1E
41	PA, ZC (BG, DG)	50S RIBOSOMAL PROTEIN L5	polymer	182	21061.6	2	UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673)	THERMUS THERMOPHILUS
42	AD, QA (BH, DH)	50S RIBOSOMAL PROTEIN L6	polymer	180	19568.9	2	UniProt (Q5SHQ3) Pfam (PF00347) UniProt (by SIFTS) (P0DOY8)	THERMUS THERMOPHILUS
43	BD, RA (BJ, DJ)	50S RIBOSOMAL PROTEIN L10	polymer	173	14741.1	2		THERMUS THERMOPHILUS
44	CD, SA (BK, DK)	50S RIBOSOMAL PROTEIN L11	polymer	147	15526.1	2	UniProt (Q5SLP6) Pfam (PF03946) Pfam (PF00298)	THERMUS THERMOPHILUS
45	DD, ED, IB, JB, SD... (BL, BM, Bl, Bm, DL...)	50S RIBOSOMAL PROTEIN L12	polymer	125	10656.1	8		THERMUS THERMOPHILUS
46	FD, VA (BN, DN)	50S RIBOSOMAL PROTEIN L13	polymer	140	15927.9	2	UniProt (P60488) Pfam (PF00572)	THERMUS THERMOPHILUS
47	GD, WA (BO, DO)	50S RIBOSOMAL PROTEIN L14	polymer	122	13323.6	2	UniProt (Q5SHP8) Pfam (PF00238)	THERMUS THERMOPHILUS
48	HD, XA (BP, DP)	50S RIBOSOMAL PROTEIN L15	polymer	150	16319.1	2	UniProt (Q5SHQ7) Pfam (PF00828)	THERMUS THERMOPHILUS
49	ID, YA (BQ, DQ)	50S RIBOSOMAL PROTEIN L16	polymer	141	15993.9	2	UniProt (P60489) Pfam (PF00252)	THERMUS THERMOPHILUS
50	JD, ZA (BR, DR)	50S RIBOSOMAL PROTEIN L17	polymer	118	13750.1	2	UniProt (Q9Z9H5) Pfam (PF01196)	THERMUS THERMOPHILUS
51	AB, KD (BS, DS)	50S RIBOSOMAL PROTEIN L18	polymer	112	12639.8	2	UniProt (Q5SHQ4) Pfam (PF00861)	THERMUS THERMOPHILUS	TL24
52	BB, LD (BT, DT)	50S RIBOSOMAL PROTEIN L19	polymer	146	17188.8	2	UniProt (P60490) Pfam (PF01245)	THERMUS THERMOPHILUS
53	CB, MD (BU, DU)	50S RIBOSOMAL PROTEIN L20	polymer	118	13779.3	2	UniProt (P60491) Pfam (PF00453)	THERMUS THERMOPHILUS
54	DB, ND (BV, DV)	50S RIBOSOMAL PROTEIN L21	polymer	101	11069.2	2	UniProt (P60492) Pfam (PF00829)	THERMUS THERMOPHILUS
55	EB, OD (BW, DW)	50S RIBOSOMAL PROTEIN L22	polymer	113	12808.1	2	UniProt (Q5SHP3) Pfam (PF00237)	THERMUS THERMOPHILUS
56	FB, PD (BX, DX)	50S RIBOSOMAL PROTEIN L23	polymer	96	10759.8	2	UniProt (Q5SHP0) Pfam (PF00276)	THERMUS THERMOPHILUS
57	GB, QD (BY, DY)	50S RIBOSOMAL PROTEIN L24	polymer	110	12085.6	2	UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136)	THERMUS THERMOPHILUS
58	HB, RD (BZ, DZ)	50S RIBOSOMAL PROTEIN L25	polymer	206	23238.6	2	UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693)	THERMUS THERMOPHILUS	TL5
59	AE, BE, CE, GE, HE... (B9, CD, CN, D4, D9...)	ZINC ION	non-polymer		65.4	8	Chemie (ZN)
60	DE, WD (CY, AY)	MAGNESIUM ION	non-polymer		24.3	2	Chemie (MG)
61	EE, XD (CY, AY)	FUSIDIC ACID	non-polymer		516.7	2	Chemie (FUA)
62	FE, YD (CY, AY)	GUANOSINE-5'-DIPHOSPHATE	non-polymer		443.2	2	Chemie (GDP)

Contents of the asymmetric unit

Polymers	Number of chains	124
	Total formula weight	4769808.2
Non-Polymers*	Number of molecules	14
	Total formula weight	2491.7
All*	Total formula weight	4772299.9

*Water molecules are not included.