Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V56

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, CA16S rRNApolymer1542499690.02GenBank (836656)Escherichia coli
2AC, CC30S ribosomal protein S3polymer23225900.12UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli
3AD, CD30S ribosomal protein S4polymer20523383.02UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli
4AE, CE30S ribosomal protein S5polymer16617498.22UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli
5AF, CF30S ribosomal protein S6polymer13515727.52UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli
6AG, CG30S ribosomal protein S7polymer17819924.02UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli
7AH, CH30S ribosomal protein S8polymer12914015.42UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli
8AI, CI30S ribosomal protein S9polymer12914755.12UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli
9AJ, CJ30S ribosomal protein S10polymer10311755.62UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli
10AK, CK30S ribosomal protein S11polymer12813739.82UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli
11AL, CL30S ribosomal protein S12polymer12313637.02UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli
12AM, CM30S ribosomal protein S13polymer11712997.32UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli
13AP, CP30S ribosomal protein S16polymer829207.62UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli
14AQ, CQ30S ribosomal protein S17polymer839593.32UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli
15AR, CR30S ribosomal protein S18polymer748874.32UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli
16AS, CS30S ribosomal protein S19polymer9110324.22UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli
17AT, CT30S ribosomal protein S20polymer869577.32UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli
18AB, CB30S ribosomal protein S2polymer24026650.52UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli
19AU, CU30S ribosomal protein S21polymer708392.82UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli
20AO, CO30S ribosomal protein S15polymer8910290.82UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli
21AN, CN30S ribosomal protein S14polymer10011475.42UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli
22BA, DA5S rRNApolymer12038790.12GenBank (85674274)Escherichia coli
23BB, DB23S rRNApolymer2904941612.42GenBank (85674274)Escherichia coli
24BI, DI50S ribosomal protein L11polymer14114763.22UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coli
25BC, DC50S ribosomal protein L2polymer27229792.42UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli
26BD, DD50S ribosomal protein L3polymer20922277.52UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli
27BK, DK50S ribosomal protein L14polymer12313565.12UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli
28BP, DP50S ribosomal protein L19polymer11413028.12UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli
29BE, DE50S ribosomal protein L4polymer20122121.62UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli
30BY, DY50S ribosomal protein L30polymer586423.62UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli
31B0, D050S ribosomal protein L32polymer566332.22UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli
32B4, D450S ribosomal protein L36polymer384377.42UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coliRibosomal protein B
33B1, D150S ribosomal protein L33polymer546257.42UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli
34B3, D350S ribosomal protein L35polymer647181.82UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliRibosomal protein A
35BV, DV50S ribosomal protein L25polymer9410713.52UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli
36B2, D250S ribosomal protein L34polymer465397.52UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli
37BL, DL50S ribosomal protein L15polymer14415008.52UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli
38BM, DM50S ribosomal protein L16polymer13615312.32UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli
39BX, DX50S ribosomal protein L29polymer637286.52UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli
40BH, DH50S ribosomal protein L9polymer14915789.02UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli
41BJ, DJ50S ribosomal protein L13polymer14216050.62UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli
42BN, DN50S ribosomal protein L17polymer12714393.72UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli
43BO, DO50S ribosomal protein L18polymer11712794.72UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli
44BQ, DQ50S ribosomal protein L20polymer11713396.82UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli
45BS, DS50S ribosomal protein L22polymer11012253.42UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli
46BU, DU50S ribosomal protein L24polymer10311208.12UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli
47BF, DF50S ribosomal protein L5polymer17820202.42UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli
48BG, DG50S ribosomal protein L6polymer17618801.62UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli
49BR, DR50S ribosomal protein L21polymer10311586.42UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli
50BT, DT50S ribosomal protein L23polymer10011222.22UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli
51BZ, DZ50S ribosomal protein L28polymer789027.62UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli
52BW, DW50S ribosomal protein L27polymer849015.32UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli
53AA, BB, CA, DB, DN...MAGNESIUM IONnon-polymer24.3340Chemie (MG)
54AA, CASPECTINOMYCINnon-polymer332.42Chemie (SCM)
55D4, B4ZINC IONnon-polymer65.42Chemie (ZN)
56waterwater18.01613Chemie (HOH)
Sequence modifications
BA, DA: 1 - 119 (GenBank: 85674274)
PDBExternal DatabaseDetails
U 120-insertion
BB, DB: 1 - 2902 (GenBank: 85674274)
PDBExternal DatabaseDetails
U 2903-insertion
U 2904-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains104
Total formula weight4286783.1
Non-Polymers*Number of molecules344
Total formula weight9059.2
All*Total formula weight4295842.3
*Water molecules are not included.

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon