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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V51

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, CA16S ribosomal RNApolymer1522493958.32THERMUS THERMOPHILUS
2AB, CB30S RIBOSOMAL PROTEIN S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)
In PDB		THERMUS THERMOPHILUS
3AC, CC30S RIBOSOMAL PROTEIN S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		THERMUS THERMOPHILUS
4AD, CD30S RIBOSOMAL PROTEIN S4polymer20924373.42UniProt (P80373)
Pfam (PF01479)
Pfam (PF00163)
In PDB		THERMUS THERMOPHILUS
5AE, CE30S RIBOSOMAL PROTEIN S5polymer16217583.42UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		THERMUS THERMOPHILUS
6AF, CF30S RIBOSOMAL PROTEIN S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		THERMUS THERMOPHILUSTS9
7AG, CG30S RIBOSOMAL PROTEIN S7polymer15618051.02UniProt (P17291)
Pfam (PF00177)
In PDB		THERMUS THERMOPHILUS
8AH, CH30S RIBOSOMAL PROTEIN S8polymer13815868.62UniProt (Q5SHQ2)
In PDB		THERMUS THERMOPHILUS
9AI, CI30S RIBOSOMAL PROTEIN S9polymer12814429.72UniProt (P62669)
Pfam (PF00380)
In PDB		THERMUS THERMOPHILUS
10AJ, CJ30S RIBOSOMAL PROTEIN S10polymer10511955.02UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		THERMUS THERMOPHILUS
11AK, CK30S RIBOSOMAL PROTEIN S11polymer12913737.92UniProt (P80376)
Pfam (PF00411)
In PDB		THERMUS THERMOPHILUS
12AL, CL30S RIBOSOMAL PROTEIN S12polymer13514920.82UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		THERMUS THERMOPHILUS
13AM, CM30S RIBOSOMAL PROTEIN S13polymer12614338.92UniProt (P80377)
Pfam (PF00416)
In PDB		THERMUS THERMOPHILUS
14AN, CN30S RIBOSOMAL PROTEIN S14polymer617158.72UniProt (Q5SHQ1)
In PDB		THERMUS THERMOPHILUS
15AO, CO30S RIBOSOMAL PROTEIN S15polymer8910578.42UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		THERMUS THERMOPHILUS
16AP, CP30S RIBOSOMAL PROTEIN S16polymer8810410.02UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		THERMUS THERMOPHILUS
17AQ, CQ30S RIBOSOMAL PROTEIN S17polymer10512325.72UniProt (Q5SHP7)
In PDB		THERMUS THERMOPHILUS
18AR, CR30S RIBOSOMAL PROTEIN S18polymer8810258.32UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		THERMUS THERMOPHILUS
19AS, CS30S RIBOSOMAL PROTEIN S19polymer9310605.52UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		THERMUS THERMOPHILUS
20AT, CT30S RIBOSOMAL PROTEIN S20polymer10611736.12UniProt (P80380)
Pfam (PF01649)
In PDB		THERMUS THERMOPHILUS
21AU, CU30S RIBOSOMAL PROTEIN THXpolymer273350.02UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		THERMUS THERMOPHILUS
22AV, CVP-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)polymer7724816.82Escherichia coli K-12
23AW, AY, CW, CYE-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)polymer7624485.54Escherichia coli K-12
24AX, CXMRNApolymer247827.82synthetic construct
25B0, D050S RIBOSOMAL PROTEIN L27polymer859529.12UniProt (P60493)
Pfam (PF01016)
In PDB		THERMUS THERMOPHILUS
26B1, D150S RIBOSOMAL PROTEIN L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)
In PDB		THERMUS THERMOPHILUS
27B2, D250S RIBOSOMAL PROTEIN L29polymer728670.32UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		THERMUS THERMOPHILUS
28B3, D350S RIBOSOMAL PROTEIN L30polymer606799.12UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		THERMUS THERMOPHILUS
29B4, D450S RIBOSOMAL PROTEIN L31polymer718300.52UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		THERMUS THERMOPHILUS
30B5, D550S RIBOSOMAL PROTEIN L32polymer606722.12UniProt (P80339)
Pfam (PF01783)
In PDB		THERMUS THERMOPHILUS
31B6, D650S RIBOSOMAL PROTEIN L33polymer546632.92UniProt (P35871)
Pfam (PF00471)
In PDB		THERMUS THERMOPHILUS
32B7, D750S RIBOSOMAL PROTEIN L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		THERMUS THERMOPHILUS
33B8, D850S RIBOSOMAL PROTEIN L35polymer657506.22UniProt (P80341)
Pfam (PF01632)
UniProt (by SIFTS) (Q5SKU1)
In PDB		THERMUS THERMOPHILUS
34BA, DA23S RIBOSOMAL RNApolymer2787906447.82THERMUS THERMOPHILUS
35BB, DB5S RIBOSOMAL RNApolymer12239494.52THERMUS THERMOPHILUS
36BC, DC50S RIBOSOMAL PROTEIN L1polymer22924872.72UniProt (Q5SLP7)
Pfam (PF00687)
In PDB		THERMUS THERMOPHILUS
37BD, DD50S RIBOSOMAL PROTEIN L2polymer27630532.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		THERMUS THERMOPHILUS
38BE, DE50S RIBOSOMAL PROTEIN L3polymer20622450.22UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		THERMUS THERMOPHILUS
39BF, DF50S RIBOSOMAL PROTEIN L4polymer21023271.92UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		THERMUS THERMOPHILUS
40BG, DG50S RIBOSOMAL PROTEIN L5polymer18221061.62UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		THERMUS THERMOPHILUS
41BH, DH50S RIBOSOMAL PROTEIN L6polymer18019568.92UniProt (Q5SHQ3)
In PDB		THERMUS THERMOPHILUS
42BI, DI50S RIBOSOMAL PROTEIN L9polymer14816422.22UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		THERMUS THERMOPHILUS
43BN, DN50S RIBOSOMAL PROTEIN L13polymer14015927.92UniProt (P60488)
Pfam (PF00572)
In PDB		THERMUS THERMOPHILUS
44BO, DO50S RIBOSOMAL PROTEIN L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		THERMUS THERMOPHILUS
45BP, DP50S RIBOSOMAL PROTEIN L15polymer15016319.12UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		THERMUS THERMOPHILUS
46BQ, DQ50S RIBOSOMAL PROTEIN L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		THERMUS THERMOPHILUS
47BR, DR50S RIBOSOMAL PROTEIN L17polymer11813750.12UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		THERMUS THERMOPHILUS
48BS, DS50S RIBOSOMAL PROTEIN L18polymer11212639.82UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		THERMUS THERMOPHILUS
49BT, DT50S RIBOSOMAL PROTEIN L19polymer14617188.82UniProt (P60490)
Pfam (PF01245)
In PDB		THERMUS THERMOPHILUS
50BU, DU50S RIBOSOMAL PROTEIN L20polymer11813779.32UniProt (P60491)
Pfam (PF00453)
In PDB		THERMUS THERMOPHILUS
51BV, DV50S RIBOSOMAL PROTEIN L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		THERMUS THERMOPHILUS
52BW, DW50S RIBOSOMAL PROTEIN L22polymer11312808.12UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		THERMUS THERMOPHILUS
53BX, DX50S RIBOSOMAL PROTEIN L23polymer9610759.82UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		THERMUS THERMOPHILUS
54BY, DY50S RIBOSOMAL PROTEIN L24polymer11012085.62UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		THERMUS THERMOPHILUS
55BZ, DZ50S RIBOSOMAL PROTEIN L25polymer20623238.62UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		THERMUS THERMOPHILUS
56BA, DA, AA, DB, BB...MAGNESIUM IONnon-polymer24.31379Chemie (MG)
57CA, AAPAROMOMYCINnon-polymer615.62Chemie (PAR)
58CD, CN, AD, ANZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
AB, CB: 1 - 1 (PDB: 4V51)
AB, CB: 2 - 256 (UniProt: P80371)
AC, CC: 1 - 1 (PDB: 4V51)
AC, CC: 2 - 239 (UniProt: P80372)
AD, CD: 1 - 1 (PDB: 4V51)
AD, CD: 2 - 209 (UniProt: P80373)
AE, CE: 1 - 1 (PDB: 4V51)
AE, CE: 2 - 162 (UniProt: Q5SHQ5)
AG, CG: 1 - 1 (PDB: 4V51)
AG, CG: 2 - 156 (UniProt: P17291)
AJ, CJ: 1 - 1 (PDB: 4V51)
AJ, CJ: 2 - 105 (UniProt: Q5SHN7)
AK, CK: 1 - 1 (PDB: 4V51)
AK, CK: 2 - 129 (UniProt: P80376)
AL, CL: 1 - 4 (PDB: 4V51)
AL, CL: 5 - 135 (UniProt: Q5SHN3)
AM, CM: 1 - 1 (PDB: 4V51)
AM, CM: 2 - 126 (UniProt: P80377)
AN, CN: 1 - 1 (PDB: 4V51)
AN, CN: 2 - 61 (UniProt: Q5SHQ1)
AO, CO: 1 - 1 (PDB: 4V51)
AO, CO: 2 - 89 (UniProt: Q5SJ76)
AQ, CQ: 1 - 1 (PDB: 4V51)
AQ, CQ: 2 - 105 (UniProt: Q5SHP7)
AR, CR: 1 - 1 (PDB: 4V51)
AR, CR: 2 - 88 (UniProt: Q5SLQ0)
AS, CS: 1 - 1 (PDB: 4V51)
AS, CS: 2 - 93 (UniProt: Q5SHP2)
AT, CT: 1 - 1 (PDB: 4V51)
AT, CT: 2 - 106 (UniProt: P80380)
AU, CU: 1 - 1 (PDB: 4V51)
AU, CU: 2 - 27 (UniProt: Q5SIH3)
B0, D0: 1 - 1 (PDB: 4V51)
B0, D0: 2 - 85 (UniProt: P60493)
B1, D1: 1 - 1 (PDB: 4V51)
B1, D1: 2 - 98 (UniProt: P60494)
B3, D3: 1 - 1 (PDB: 4V51)
B3, D3: 2 - 60 (UniProt: Q5SHQ6)
B5, D5: 1 - 1 (PDB: 4V51)
B5, D5: 2 - 60 (UniProt: P80339)
B6, D6: 1 - 1 (PDB: 4V51)
B6, D6: 2 - 54 (UniProt: P35871)
B8, D8: 1 - 1 (PDB: 4V51)
B8, D8: 2 - 65 (UniProt: P80341)
BC, DC: 0 - 0 (PDB: 4V51)
BC, DC: 1 - 228 (UniProt: Q5SLP7)
BD, DD: 1 - 1 (PDB: 4V51)
BD, DD: 2 - 276 (UniProt: P60405)
BG, DG: 1 - 1 (PDB: 4V51)
BG, DG: 2 - 182 (UniProt: Q5SHQ0)
BH, DH: 1 - 1 (PDB: 4V51)
BH, DH: 2 - 180 (UniProt: Q5SHQ3)
BS, DS: 1 - 1 (PDB: 4V51)
BS, DS: 2 - 112 (UniProt: Q5SHQ4)
BU, DU: 1 - 1 (PDB: 4V51)
BU, DU: 2 - 118 (UniProt: P60491)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains112
Total formula weight4459231.4
Non-Polymers*Number of molecules1385
Total formula weight35009.5
All*Total formula weight4494240.9
*Water molecules are not included.

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PDB entries from 2024-09-18

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