4V4T

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (AA)	16S ribosomal RNA	polymer	1522	493958.3	1	GenBank (155076)	Thermus thermophilus
2	B (AV)	P-site tRNA (Phe)	polymer	76	24518.6	1		Escherichia coli
3	C (AW)	E-site tRNA (Phe)	polymer	76	24743.8	1		Escherichia coli
4	D (AX)	5'-D(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3'	polymer	18	5703.4	1
5	E (AB)	30S ribosomal protein S2	polymer	256	29317.7	1	UniProt (P80371) Pfam (PF00318)	Thermus thermophilus
6	F (AC)	30S ribosomal protein S3	polymer	239	26751.1	1	UniProt (P80372) Pfam (PF07650) Pfam (PF00189)	Thermus thermophilus	TS9
7	G (AD)	30S ribosomal protein S4	polymer	209	24373.4	1	UniProt (P80373) Pfam (PF00163) Pfam (PF01479)	Thermus thermophilus
8	H (AE)	30S ribosomal protein S5	polymer	162	17583.4	1	UniProt (P27152) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q5SHQ5)	Thermus thermophilus
9	I (AF)	30S ribosomal protein S6	polymer	101	11988.8	1	UniProt (P23370) Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8)	Thermus thermophilus
10	J (AG)	30S ribosomal protein S7	polymer	156	18051.0	1	UniProt (P17291) Pfam (PF00177)	Thermus thermophilus
11	K (AH)	30S ribosomal protein S8	polymer	138	15868.6	1	UniProt (P24319) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9)	Thermus thermophilus
12	L (AI)	30S ribosomal protein S9	polymer	128	14429.7	1	UniProt (P62669) Pfam (PF00380) UniProt (by SIFTS) (P80374)	Thermus thermophilus
13	M (AJ)	30S ribosomal protein S10	polymer	105	11955.0	1	UniProt (P80375) Pfam (PF00338) UniProt (by SIFTS) (Q5SHN7)	Thermus thermophilus
14	N (AK)	30S ribosomal protein S11	polymer	129	13737.9	1	UniProt (P80376) Pfam (PF00411)	Thermus thermophilus
15	O (AL)	30S ribosomal protein S12	polymer	135	14920.8	1	GenBank (55981666) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3)	Thermus thermophilus
16	P (AM)	30S ribosomal protein S13	polymer	126	14338.9	1	UniProt (P80377) Pfam (PF00416)	Thermus thermophilus
17	Q (AN)	30S ribosomal protein S14	polymer	61	7158.7	1	UniProt (P24320) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6)	Thermus thermophilus
18	R (AO)	30S ribosomal protein S15	polymer	89	10578.4	1	UniProt (P80378) Pfam (PF00312) UniProt (by SIFTS) (Q5SJ76)	Thermus thermophilus
19	S (AP)	30S ribosomal protein S16	polymer	88	10410.0	1	UniProt (Q5SJH3) Pfam (PF00886)	Thermus thermophilus
20	T (AQ)	30S ribosomal protein S17	polymer	105	12324.7	1	UniProt (P24321) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7)	Thermus thermophilus
21	U (AR)	30S ribosomal protein S18	polymer	88	10244.3	1	UniProt (P80382) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0)	Thermus thermophilus
22	V (AS)	30S ribosomal protein S19	polymer	93	10605.5	1	UniProt (P80381) Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2)	Thermus thermophilus
23	W (AT)	30S ribosomal protein S20	polymer	106	11722.1	1	UniProt (P62661) Pfam (PF01649) UniProt (by SIFTS) (P80380)	Thermus thermophilus
24	X (AU)	30S ribosomal protein Thx	polymer	27	3350.0	1	UniProt (P62612) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3)	Thermus thermophilus
25	Y (BB)	5S ribosomal RNA	polymer	123	39846.8	1	GenBank (48271)	Thermus thermophilus
26	Z (BA)	23S ribosomal RNA	polymer	2916	948280.7	1	GenBank (48268)	Thermus thermophilus
27	AA (BD)	50S ribosomal protein L2	polymer	173	18652.6	1	Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (Q5L3Z4)	Thermus thermophilus
28	BA (BE)	50S ribosomal protein L3	polymer	338	37412.5	1	Pfam (PF00297) UniProt (by SIFTS) (P20279)	Thermus thermophilus
29	CA (BF)	50S ribosomal protein L4	polymer	246	26443.1	1	Pfam (PF00573) UniProt (by SIFTS) (P12735)	Thermus thermophilus
30	DA (BG)	50S ribosomal protein L5	polymer	176	19420.5	1	Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (P14124)	Thermus thermophilus
31	EA (BH)	50S ribosomal protein L6	polymer	177	19202.1	1	Pfam (PF00347) UniProt (by SIFTS) (Q5L408)	Thermus thermophilus
32	FA (BI)	50S ribosomal protein L9	polymer	149	16341.0	1	Pfam (PF01281) Pfam (PF03948) UniProt (by SIFTS) (P02417)	Thermus thermophilus
33	GA (BN)	50S ribosomal protein L13	polymer	145	16249.2	1	Pfam (PF00572) UniProt (by SIFTS) (P29198)	Thermus thermophilus
34	HA (BO)	50S ribosomal protein L14	polymer	122	13369.6	1	Pfam (PF00238) UniProt (by SIFTS) (Q5L413)	Thermus thermophilus
35	IA (BP)	50S ribosomal protein L15	polymer	164	17874.2	1	Pfam (PF00828) UniProt (by SIFTS) (P12737)	Thermus thermophilus
36	JA (BQ)	50S ribosomal protein L16	polymer	138	15313.3	1		Thermus thermophilus
37	KA (BS)	50S ribosomal protein L18	polymer	186	20509.7	1	Pfam (PF17144) UniProt (by SIFTS) (P14123)	Thermus thermophilus
38	LA (BT)	50S ribosomal protein L19	polymer	66	7233.7	1	Pfam (PF01246) UniProt (by SIFTS) (P14116)	Thermus thermophilus
39	MA (BW)	50S ribosomal protein L22	polymer	113	12808.1	1	UniProt (P48286) Pfam (PF00237) UniProt (by SIFTS) (Q5SHP3)	Thermus thermophilus
40	NA (BX)	50S ribosomal protein L23	polymer	84	9481.3	1	Pfam (PF00276) UniProt (by SIFTS) (P12732)	Thermus thermophilus
41	OA (BY)	50S ribosomal protein 24	polymer	119	13539.8	1	Pfam (PF16906) Pfam (PF00467) UniProt (by SIFTS) (P10972)	Thermus thermophilus
42	PA (BZ)	50S ribosomal protein CTC	polymer	253	27004.1	1	Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (Q9RX88)	Thermus thermophilus
43	QA (BR)	50S ribosomal protein L17	polymer	118	13750.1	1	UniProt (Q9Z9H5) Pfam (PF01196)	Thermus thermophilus
44	RA (BU)	50S ribosomal protein L20	polymer	118	13991.3	1	Pfam (PF00453) UniProt (by SIFTS) (Q9RSW7)	Thermus thermophilus
45	SA (BV)	50S ribosomal protein L21	polymer	100	11165.7	1	Pfam (PF00829) UniProt (by SIFTS) (Q9RY64)	Thermus thermophilus
46	TA (B2)	50S ribosomal protein L29	polymer	70	7758.7	1	Pfam (PF00831) UniProt (by SIFTS) (P10971)	Thermus thermophilus
47	UA (B3)	50S ribosomal protein L30	polymer	60	6799.1	1	UniProt (P74909) Pfam (PF00327) UniProt (by SIFTS) (Q5SHQ6)	Thermus thermophilus
48	VA (B0)	50S ribosomal protein L27	polymer	91	9609.1	1	Pfam (PF01016) UniProt (by SIFTS) (Q9RY65)	Thermus thermophilus
49	WA (B4)	50S ribosomal protein L31	polymer	73	8597.8	1	Pfam (PF01197) UniProt (by SIFTS) (Q9RW44)	Thermus thermophilus
50	XA (B5)	50S ribosomal protein L32	polymer	60	6810.0	1	Pfam (PF01783) UniProt (by SIFTS) (P49228)	Thermus thermophilus
51	YA (B6)	50S ribosomal protein L33	polymer	82	9294.9	1	Pfam (PF00471) UniProt (by SIFTS) (Q9RSS4)	Thermus thermophilus
52	ZA (B7)	50S ribosomal protein L34	polymer	47	5626.6	1	Pfam (PF00468) UniProt (by SIFTS) (Q9RSH2)	Thermus thermophilus
53	AB (B8)	50S ribosomal protein L35	polymer	64	7261.9	1	Pfam (PF01632) UniProt (by SIFTS) (Q9RSW6)	Thermus thermophilus
54	BB (B9)	50S ribosomal protein L36	polymer	36	4265.2	1	Pfam (PF00444) UniProt (by SIFTS) (Q9RSK0)	Thermus thermophilus
55	CB (BK)	50S ribosomal protein L11	polymer	141	15111.9	1	Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (P29395)	Thermus thermophilus

Sequence modifications

AA: 0 - 1521 (GenBank: 155076)

PDB	External Database	Details
G 416	-	insertion
U 905	-	insertion
C 1395	-	insertion

BA: 1 - 2906 (GenBank: 48268)

PDB	External Database	Details
G 493	-	insertion

BB: 0 - 120 (GenBank: 48271)

PDB	External Database	Details
A -1	-	insertion

Contents of the asymmetric unit

Polymers	Number of chains	55
	Total formula weight	2237658.6
All*	Total formula weight	2237658.6

*Water molecules are not included.