Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V4T

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA16S ribosomal RNApolymer1522493958.31GenBank (155076)Thermus thermophilus
2AVP-site tRNA (Phe)polymer7624518.61Escherichia coli
3AWE-site tRNA (Phe)polymer7624743.81Escherichia coli
4AX5'-D(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3'polymer185703.41
5AB30S ribosomal protein S2polymer25629317.71UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
6AC30S ribosomal protein S3polymer23926751.11UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilusTS9
7AD30S ribosomal protein S4polymer20924373.41UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
8AE30S ribosomal protein S5polymer16217583.41UniProt (P27152)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (Q5SHQ5)
In PDB		Thermus thermophilus
9AF30S ribosomal protein S6polymer10111988.81UniProt (P23370)
Pfam (PF01250)
UniProt (by SIFTS) (Q5SLP8)
In PDB		Thermus thermophilus
10AG30S ribosomal protein S7polymer15618051.01UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
11AH30S ribosomal protein S8polymer13815868.61UniProt (P24319)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)
In PDB		Thermus thermophilus
12AI30S ribosomal protein S9polymer12814429.71UniProt (P62669)
Pfam (PF00380)
UniProt (by SIFTS) (P80374)
In PDB		Thermus thermophilus
13AJ30S ribosomal protein S10polymer10511955.01UniProt (P80375)
Pfam (PF00338)
UniProt (by SIFTS) (Q5SHN7)
In PDB		Thermus thermophilus
14AK30S ribosomal protein S11polymer12913737.91UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
15AL30S ribosomal protein S12polymer13514920.81GenBank (55981666)
Pfam (PF00164)
UniProt (by SIFTS) (Q5SHN3)
In PDB		Thermus thermophilus
16AM30S ribosomal protein S13polymer12614338.91UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
17AN30S ribosomal protein S14polymer617158.71UniProt (P24320)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)
In PDB		Thermus thermophilus
18AO30S ribosomal protein S15polymer8910578.41UniProt (P80378)
Pfam (PF00312)
UniProt (by SIFTS) (Q5SJ76)
In PDB		Thermus thermophilus
19AP30S ribosomal protein S16polymer8810410.01UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
20AQ30S ribosomal protein S17polymer10512324.71UniProt (P24321)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)
In PDB		Thermus thermophilus
21AR30S ribosomal protein S18polymer8810244.31UniProt (P80382)
Pfam (PF01084)
UniProt (by SIFTS) (Q5SLQ0)
In PDB		Thermus thermophilus
22AS30S ribosomal protein S19polymer9310605.51UniProt (P80381)
Pfam (PF00203)
UniProt (by SIFTS) (Q5SHP2)
In PDB		Thermus thermophilus
23AT30S ribosomal protein S20polymer10611722.11UniProt (P62661)
Pfam (PF01649)
UniProt (by SIFTS) (P80380)
In PDB		Thermus thermophilus
24AU30S ribosomal protein Thxpolymer273350.01UniProt (P62612)
Pfam (PF17070)
UniProt (by SIFTS) (Q5SIH3)
In PDB		Thermus thermophilus
25BB5S ribosomal RNApolymer12339846.81GenBank (48271)Thermus thermophilus
26BA23S ribosomal RNApolymer2916948280.71GenBank (48268)Thermus thermophilus
27BD50S ribosomal protein L2polymer17318652.61Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (Q5L3Z4)
In PDB		Thermus thermophilus
28BE50S ribosomal protein L3polymer33837412.51Pfam (PF00297)
UniProt (by SIFTS) (P20279)
In PDB		Thermus thermophilus
29BF50S ribosomal protein L4polymer24626443.11Pfam (PF00573)
UniProt (by SIFTS) (P12735)
In PDB		Thermus thermophilus
30BG50S ribosomal protein L5polymer17619420.51Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P14124)
In PDB		Thermus thermophilus
31BH50S ribosomal protein L6polymer17719202.11Pfam (PF00347)
UniProt (by SIFTS) (Q5L408)
In PDB		Thermus thermophilus
32BI50S ribosomal protein L9polymer14916341.01Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P02417)
In PDB		Thermus thermophilus
33BN50S ribosomal protein L13polymer14516249.21Pfam (PF00572)
UniProt (by SIFTS) (P29198)
In PDB		Thermus thermophilus
34BO50S ribosomal protein L14polymer12213369.61Pfam (PF00238)
UniProt (by SIFTS) (Q5L413)
In PDB		Thermus thermophilus
35BP50S ribosomal protein L15polymer16417874.21Pfam (PF00828)
UniProt (by SIFTS) (P12737)
In PDB		Thermus thermophilus
36BQ50S ribosomal protein L16polymer13815313.31Thermus thermophilus
37BS50S ribosomal protein L18polymer18620509.71Pfam (PF17144)
UniProt (by SIFTS) (P14123)
In PDB		Thermus thermophilus
38BT50S ribosomal protein L19polymer667233.71Pfam (PF01246)
UniProt (by SIFTS) (P14116)
In PDB		Thermus thermophilus
39BW50S ribosomal protein L22polymer11312808.11UniProt (P48286)
Pfam (PF00237)
UniProt (by SIFTS) (Q5SHP3)
In PDB		Thermus thermophilus
40BX50S ribosomal protein L23polymer849481.31Pfam (PF00276)
UniProt (by SIFTS) (P12732)
In PDB		Thermus thermophilus
41BY50S ribosomal protein 24polymer11913539.81Pfam (PF16906)
Pfam (PF00467)
UniProt (by SIFTS) (P10972)
In PDB		Thermus thermophilus
42BZ50S ribosomal protein CTCpolymer25327004.11Pfam (PF01386)
Pfam (PF14693)
UniProt (by SIFTS) (Q9RX88)
In PDB		Thermus thermophilus
43BR50S ribosomal protein L17polymer11813750.11UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
44BU50S ribosomal protein L20polymer11813991.31Pfam (PF00453)
UniProt (by SIFTS) (Q9RSW7)
In PDB		Thermus thermophilus
45BV50S ribosomal protein L21polymer10011165.71Pfam (PF00829)
UniProt (by SIFTS) (Q9RY64)
In PDB		Thermus thermophilus
46B250S ribosomal protein L29polymer707758.71Pfam (PF00831)
UniProt (by SIFTS) (P10971)
In PDB		Thermus thermophilus
47B350S ribosomal protein L30polymer606799.11UniProt (P74909)
Pfam (PF00327)
UniProt (by SIFTS) (Q5SHQ6)
In PDB		Thermus thermophilus
48B050S ribosomal protein L27polymer919609.11Pfam (PF01016)
UniProt (by SIFTS) (Q9RY65)
In PDB		Thermus thermophilus
49B450S ribosomal protein L31polymer738597.81Pfam (PF01197)
UniProt (by SIFTS) (Q9RW44)
In PDB		Thermus thermophilus
50B550S ribosomal protein L32polymer606810.01Pfam (PF01783)
UniProt (by SIFTS) (P49228)
In PDB		Thermus thermophilus
51B650S ribosomal protein L33polymer829294.91Pfam (PF00471)
UniProt (by SIFTS) (Q9RSS4)
In PDB		Thermus thermophilus
52B750S ribosomal protein L34polymer475626.61Pfam (PF00468)
UniProt (by SIFTS) (Q9RSH2)
In PDB		Thermus thermophilus
53B850S ribosomal protein L35polymer647261.91Pfam (PF01632)
UniProt (by SIFTS) (Q9RSW6)
In PDB		Thermus thermophilus
54B950S ribosomal protein L36polymer364265.21Pfam (PF00444)
UniProt (by SIFTS) (Q9RSK0)
In PDB		Thermus thermophilus
55BK50S ribosomal protein L11polymer14115111.91Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (P29395)
In PDB		Thermus thermophilus
Sequence modifications
AA: 0 - 1521 (GenBank: 155076)
PDBExternal DatabaseDetails
G 416-insertion
U 905-insertion
C 1395-insertion
BA: 1 - 2906 (GenBank: 48268)
PDBExternal DatabaseDetails
G 493-insertion
BB: 0 - 120 (GenBank: 48271)
PDBExternal DatabaseDetails
A -1-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains55
Total formula weight2237658.6
All*Total formula weight2237658.6
*Water molecules are not included.

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon