4V4P
Crystal structure of 70S ribosome with thrS operator and tRNAs.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (AB) | 5S ribosomal RNA | polymer | 123 | 39846.8 | 1 | GenBank (48271) | Thermus thermophilus | |
| 2 | B (AA) | 23S ribosomal RNA | polymer | 2915 | 947975.5 | 1 | GenBank (48268) | Thermus thermophilus | |
| 3 | C (AC) | 50S ribosomal protein L1 | polymer | 228 | 24736.5 | 1 | UniProt (P27150) Pfam (PF00687) | Thermus thermophilus | |
| 4 | D (AD) | 50S ribosomal protein L2 | polymer | 178 | 19283.4 | 1 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus | |
| 5 | E (AE) | 50S ribosomal protein L3 | polymer | 338 | 37412.5 | 1 | Thermus thermophilus | ||
| 6 | F (AF) | 50S ribosomal protein L4 | polymer | 246 | 26443.1 | 1 | Thermus thermophilus | ||
| 7 | G (AG) | 50S ribosomal protein L5 | polymer | 176 | 19420.5 | 1 | Thermus thermophilus | ||
| 8 | H (AH) | 50S ribosomal protein L6 | polymer | 177 | 19202.1 | 1 | Thermus thermophilus | ||
| 9 | I, J (AI, AJ) | 50S ribosomal protein L7/L12 | polymer | 128 | 13475.5 | 2 | Thermus thermophilus | ||
| 10 | K (AK) | 50S ribosomal protein L9 | polymer | 149 | 16341.0 | 1 | Thermus thermophilus | ||
| 11 | L (AL) | 50S ribosomal protein L11 | polymer | 141 | 15111.9 | 1 | Thermus thermophilus | ||
| 12 | M (AM) | 50S ribosomal protein L13 | polymer | 145 | 16249.2 | 1 | Thermus thermophilus | ||
| 13 | N (AN) | 50S ribosomal protein L14 | polymer | 122 | 13369.6 | 1 | Thermus thermophilus | ||
| 14 | O (AO) | 50S ribosomal protein L15 | polymer | 164 | 17874.2 | 1 | Thermus thermophilus | ||
| 15 | P (AP) | 50S ribosomal protein L16 | polymer | 138 | 15313.3 | 1 | Thermus thermophilus | ||
| 16 | Q (AQ) | 50S ribosomal protein L18 | polymer | 186 | 20509.7 | 1 | Thermus thermophilus | ||
| 17 | R (AR) | 50S ribosomal protein L19 | polymer | 66 | 7233.7 | 1 | Thermus thermophilus | ||
| 18 | S (AS) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 1 | UniProt (P48286) Pfam (PF00237) UniProt (by SIFTS) (Q5SHP3) | Thermus thermophilus | |
| 19 | T (AT) | 50S ribosomal protein L23 | polymer | 84 | 9481.3 | 1 | Thermus thermophilus | ||
| 20 | U (AU) | 50S ribosomal protein L24 | polymer | 119 | 13539.8 | 1 | Thermus thermophilus | ||
| 21 | V (AV) | 50S general stress protein CTC (L25) | polymer | 253 | 27004.1 | 1 | Thermus thermophilus | ||
| 22 | W (AW) | 50S ribosomal protein L29 | polymer | 70 | 7758.7 | 1 | Thermus thermophilus | ||
| 23 | X (AX) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 1 | UniProt (P74909) Pfam (PF00327) UniProt (by SIFTS) (Q5SHQ6) | Thermus thermophilus | |
| 24 | Y (A0) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 1 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus | |
| 25 | Z (A1) | 50S ribosomal protein L20 | polymer | 118 | 13991.3 | 1 | Thermus thermophilus | ||
| 26 | AA (A2) | 50S ribosomal protein L21 | polymer | 100 | 11165.7 | 1 | Thermus thermophilus | ||
| 27 | BA (A3) | 50S ribosomal protein L27 | polymer | 91 | 9609.1 | 1 | Thermus thermophilus | ||
| 28 | CA (A4) | 50S ribosomal protein L31 | polymer | 73 | 8597.8 | 1 | Thermus thermophilus | ||
| 29 | DA (A5) | 50S ribosomal protein L32 | polymer | 60 | 6810.0 | 1 | Thermus thermophilus | ||
| 30 | EA (A6) | 50S ribosomal protein L33 | polymer | 82 | 9294.9 | 1 | Thermus thermophilus | ||
| 31 | FA (A7) | 50S ribosomal protein L34 | polymer | 47 | 5626.6 | 1 | Thermus thermophilus | ||
| 32 | GA (A8) | 50S ribosomal protein L35 | polymer | 64 | 7261.9 | 1 | Thermus thermophilus | ||
| 33 | HA (A9) | 50S ribosomal protein L36 | polymer | 36 | 4265.2 | 1 | Thermus thermophilus | ||
| 34 | IA (BA) | 16S rRNA | polymer | 1522 | 493958.3 | 1 | GenBank (155076) | Thermus thermophilus | |
| 35 | JA, KA (BB, BC) | tRNA Phe (unmodified bases) | polymer | 76 | 24518.6 | 2 | Thermus thermophilus | ||
| 36 | LA (B1) | thrS mRNA operator | polymer | 78 | 24992.8 | 1 | |||
| 37 | MA (BE) | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
| 38 | NA (BF) | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 1 | UniProt (Q5SHP4) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) | Thermus thermophilus | |
| 39 | OA (BG) | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 1 | UniProt (Q5SHR5) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P80373) | Thermus thermophilus | |
| 40 | PA (BH) | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus | |
| 41 | QA (BI) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus | TS9 |
| 42 | RA (BJ) | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 1 | UniProt (Q5SHN4) Pfam (PF00177) UniProt (by SIFTS) (P17291) | Thermus thermophilus | |
| 43 | SA (BK) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) | Thermus thermophilus | |
| 44 | TA (BL) | 30S ribosomal protein S9 | polymer | 128 | 14429.7 | 1 | UniProt (Q5SIB0) Pfam (PF00380) UniProt (by SIFTS) (P80374) | Thermus thermophilus | |
| 45 | UA (BM) | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus | |
| 46 | VA (BN) | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
| 47 | WA (BO) | 30S ribosomal protein S12 | polymer | 135 | 14920.8 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus HB8 | |
| 48 | XA (BP) | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
| 49 | YA (BQ) | 30S ribosomal protein S14 | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) | Thermus thermophilus | |
| 50 | ZA (BR) | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus | |
| 51 | AB (BS) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus | |
| 52 | BB (BT) | 30S ribosomal protein S17 | polymer | 105 | 12324.7 | 1 | UniProt (Q5SHP7) | Thermus thermophilus HB8 | |
| 53 | CB (BU) | 30S ribosomal protein S18 | polymer | 88 | 10244.3 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus | |
| 54 | DB (BV) | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus | |
| 55 | EB (BW) | 30S ribosomal protein S20 | polymer | 106 | 11722.1 | 1 | UniProt (Q5SIH2) Pfam (PF01649) UniProt (by SIFTS) (P80380) | Thermus thermophilus | |
| 56 | FB (BX) | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus |
Sequence modifications
AB: 0 - 119 (GenBank: 48271)
AA: 1 - 2906 (GenBank: 48268)
BK: 1 - 138 (UniProt: Q5SHQ2)
BT: 1 - 105 (UniProt: Q5SHP7)
BW: 1 - 106 (UniProt: Q5SIH2)
| PDB | External Database | Details |
|---|---|---|
| A -1 | - | insertion |
| U 120 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| G 494 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Asp 25 | Glu 25 | conflict |
| Arg 37 | Lys 37 | conflict |
| Asp 52 | Glu 52 | conflict |
| Val 61 | Ile 61 | conflict |
| Tyr 62 | His 62 | conflict |
| His 81 | Lys 81 | conflict |
| Lys 88 | Arg 88 | conflict |
| Ser 115 | Pro 115 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Gln 96 | Glu 96 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Val 41 | Ile 40 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 58 |
| Total formula weight | 2308735.8 | |
| All* | Total formula weight | 2308735.8 |
