4V4P
Crystal structure of 70S ribosome with thrS operator and tRNAs.
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AB | 5S ribosomal RNA | polymer | 123 | 39846.8 | 1 | GenBank (48271) | Thermus thermophilus | |
2 | AA | 23S ribosomal RNA | polymer | 2915 | 947975.5 | 1 | GenBank (48268) | Thermus thermophilus | |
3 | AC | 50S ribosomal protein L1 | polymer | 228 | 24736.5 | 1 | UniProt (P27150) Pfam (PF00687) In PDB | Thermus thermophilus | |
4 | AD | 50S ribosomal protein L2 | polymer | 178 | 19283.4 | 1 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) In PDB | Thermus thermophilus | |
5 | AE | 50S ribosomal protein L3 | polymer | 338 | 37412.5 | 1 | Thermus thermophilus | ||
6 | AF | 50S ribosomal protein L4 | polymer | 246 | 26443.1 | 1 | Thermus thermophilus | ||
7 | AG | 50S ribosomal protein L5 | polymer | 176 | 19420.5 | 1 | Thermus thermophilus | ||
8 | AH | 50S ribosomal protein L6 | polymer | 177 | 19202.1 | 1 | Thermus thermophilus | ||
9 | AI, AJ | 50S ribosomal protein L7/L12 | polymer | 128 | 13475.5 | 2 | Thermus thermophilus | ||
10 | AK | 50S ribosomal protein L9 | polymer | 149 | 16341.0 | 1 | Thermus thermophilus | ||
11 | AL | 50S ribosomal protein L11 | polymer | 141 | 15111.9 | 1 | Thermus thermophilus | ||
12 | AM | 50S ribosomal protein L13 | polymer | 145 | 16249.2 | 1 | Thermus thermophilus | ||
13 | AN | 50S ribosomal protein L14 | polymer | 122 | 13369.6 | 1 | Thermus thermophilus | ||
14 | AO | 50S ribosomal protein L15 | polymer | 164 | 17874.2 | 1 | Thermus thermophilus | ||
15 | AP | 50S ribosomal protein L16 | polymer | 138 | 15313.3 | 1 | Thermus thermophilus | ||
16 | AQ | 50S ribosomal protein L18 | polymer | 186 | 20509.7 | 1 | Thermus thermophilus | ||
17 | AR | 50S ribosomal protein L19 | polymer | 66 | 7233.7 | 1 | Thermus thermophilus | ||
18 | AS | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 1 | UniProt (P48286) Pfam (PF00237) UniProt (by SIFTS) (Q5SHP3) In PDB | Thermus thermophilus | |
19 | AT | 50S ribosomal protein L23 | polymer | 84 | 9481.3 | 1 | Thermus thermophilus | ||
20 | AU | 50S ribosomal protein L24 | polymer | 119 | 13539.8 | 1 | Thermus thermophilus | ||
21 | AV | 50S general stress protein CTC (L25) | polymer | 253 | 27004.1 | 1 | Thermus thermophilus | ||
22 | AW | 50S ribosomal protein L29 | polymer | 70 | 7758.7 | 1 | Thermus thermophilus | ||
23 | AX | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 1 | UniProt (P74909) Pfam (PF00327) UniProt (by SIFTS) (Q5SHQ6) In PDB | Thermus thermophilus | |
24 | A0 | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 1 | UniProt (Q9Z9H5) Pfam (PF01196) In PDB | Thermus thermophilus | |
25 | A1 | 50S ribosomal protein L20 | polymer | 118 | 13991.3 | 1 | Thermus thermophilus | ||
26 | A2 | 50S ribosomal protein L21 | polymer | 100 | 11165.7 | 1 | Thermus thermophilus | ||
27 | A3 | 50S ribosomal protein L27 | polymer | 91 | 9609.1 | 1 | Thermus thermophilus | ||
28 | A4 | 50S ribosomal protein L31 | polymer | 73 | 8597.8 | 1 | Thermus thermophilus | ||
29 | A5 | 50S ribosomal protein L32 | polymer | 60 | 6810.0 | 1 | Thermus thermophilus | ||
30 | A6 | 50S ribosomal protein L33 | polymer | 82 | 9294.9 | 1 | Thermus thermophilus | ||
31 | A7 | 50S ribosomal protein L34 | polymer | 47 | 5626.6 | 1 | Thermus thermophilus | ||
32 | A8 | 50S ribosomal protein L35 | polymer | 64 | 7261.9 | 1 | Thermus thermophilus | ||
33 | A9 | 50S ribosomal protein L36 | polymer | 36 | 4265.2 | 1 | Thermus thermophilus | ||
34 | BA | 16S rRNA | polymer | 1522 | 493958.3 | 1 | GenBank (155076) | Thermus thermophilus | |
35 | BB, BC | tRNA Phe (unmodified bases) | polymer | 76 | 24518.6 | 2 | Thermus thermophilus | ||
36 | B1 | thrS mRNA operator | polymer | 78 | 24992.8 | 1 | |||
37 | BE | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) In PDB | Thermus thermophilus | |
38 | BF | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 1 | UniProt (Q5SHP4) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) In PDB | Thermus thermophilus | |
39 | BG | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 1 | UniProt (Q5SHR5) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P80373) In PDB | Thermus thermophilus | |
40 | BH | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus | |
41 | BI | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | Thermus thermophilus | TS9 |
42 | BJ | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 1 | UniProt (Q5SHN4) Pfam (PF00177) UniProt (by SIFTS) (P17291) In PDB | Thermus thermophilus | |
43 | BK | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) In PDB | Thermus thermophilus | |
44 | BL | 30S ribosomal protein S9 | polymer | 128 | 14429.7 | 1 | UniProt (Q5SIB0) Pfam (PF00380) UniProt (by SIFTS) (P80374) In PDB | Thermus thermophilus | |
45 | BM | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | Thermus thermophilus | |
46 | BN | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) In PDB | Thermus thermophilus | |
47 | BO | 30S ribosomal protein S12 | polymer | 135 | 14920.8 | 1 | UniProt (Q5SHN3) Pfam (PF00164) In PDB | Thermus thermophilus HB8 | |
48 | BP | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) In PDB | Thermus thermophilus | |
49 | BQ | 30S ribosomal protein S14 | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) In PDB | Thermus thermophilus | |
50 | BR | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | Thermus thermophilus | |
51 | BS | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | Thermus thermophilus | |
52 | BT | 30S ribosomal protein S17 | polymer | 105 | 12324.7 | 1 | UniProt (Q5SHP7) In PDB | Thermus thermophilus HB8 | |
53 | BU | 30S ribosomal protein S18 | polymer | 88 | 10244.3 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) In PDB | Thermus thermophilus | |
54 | BV | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | Thermus thermophilus | |
55 | BW | 30S ribosomal protein S20 | polymer | 106 | 11722.1 | 1 | UniProt (Q5SIH2) Pfam (PF01649) UniProt (by SIFTS) (P80380) In PDB | Thermus thermophilus | |
56 | BX | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | Thermus thermophilus |
Sequence modifications
AB: 0 - 119 (GenBank: 48271)
AA: 1 - 2906 (GenBank: 48268)
BK: 1 - 138 (UniProt: Q5SHQ2)
BT: 1 - 105 (UniProt: Q5SHP7)
BW: 1 - 106 (UniProt: Q5SIH2)
PDB | External Database | Details |
---|---|---|
A -1 | - | insertion |
U 120 | - | insertion |
PDB | External Database | Details |
---|---|---|
G 494 | - | insertion |
PDB | External Database | Details |
---|---|---|
Asp 25 | Glu 25 | conflict |
Arg 37 | Lys 37 | conflict |
Asp 52 | Glu 52 | conflict |
Val 61 | Ile 61 | conflict |
Tyr 62 | His 62 | conflict |
His 81 | Lys 81 | conflict |
Lys 88 | Arg 88 | conflict |
Ser 115 | Pro 115 | conflict |
PDB | External Database | Details |
---|---|---|
Gln 96 | Glu 96 | conflict |
PDB | External Database | Details |
---|---|---|
Val 41 | Ile 40 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 58 |
Total formula weight | 2308735.8 | |
All* | Total formula weight | 2308735.8 |