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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V4P

Crystal structure of 70S ribosome with thrS operator and tRNAs.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AB5S ribosomal RNApolymer12339846.81GenBank (48271)Thermus thermophilus
2AA23S ribosomal RNApolymer2915947975.51GenBank (48268)Thermus thermophilus
3AC50S ribosomal protein L1polymer22824736.51UniProt (P27150)
Pfam (PF00687)
In PDB		Thermus thermophilus
4AD50S ribosomal protein L2polymer17819283.41UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
5AE50S ribosomal protein L3polymer33837412.51Thermus thermophilus
6AF50S ribosomal protein L4polymer24626443.11Thermus thermophilus
7AG50S ribosomal protein L5polymer17619420.51Thermus thermophilus
8AH50S ribosomal protein L6polymer17719202.11Thermus thermophilus
9AI, AJ50S ribosomal protein L7/L12polymer12813475.52Thermus thermophilus
10AK50S ribosomal protein L9polymer14916341.01Thermus thermophilus
11AL50S ribosomal protein L11polymer14115111.91Thermus thermophilus
12AM50S ribosomal protein L13polymer14516249.21Thermus thermophilus
13AN50S ribosomal protein L14polymer12213369.61Thermus thermophilus
14AO50S ribosomal protein L15polymer16417874.21Thermus thermophilus
15AP50S ribosomal protein L16polymer13815313.31Thermus thermophilus
16AQ50S ribosomal protein L18polymer18620509.71Thermus thermophilus
17AR50S ribosomal protein L19polymer667233.71Thermus thermophilus
18AS50S ribosomal protein L22polymer11312808.11UniProt (P48286)
Pfam (PF00237)
UniProt (by SIFTS) (Q5SHP3)
In PDB		Thermus thermophilus
19AT50S ribosomal protein L23polymer849481.31Thermus thermophilus
20AU50S ribosomal protein L24polymer11913539.81Thermus thermophilus
21AV50S general stress protein CTC (L25)polymer25327004.11Thermus thermophilus
22AW50S ribosomal protein L29polymer707758.71Thermus thermophilus
23AX50S ribosomal protein L30polymer606799.11UniProt (P74909)
Pfam (PF00327)
UniProt (by SIFTS) (Q5SHQ6)
In PDB		Thermus thermophilus
24A050S ribosomal protein L17polymer11813750.11UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
25A150S ribosomal protein L20polymer11813991.31Thermus thermophilus
26A250S ribosomal protein L21polymer10011165.71Thermus thermophilus
27A350S ribosomal protein L27polymer919609.11Thermus thermophilus
28A450S ribosomal protein L31polymer738597.81Thermus thermophilus
29A550S ribosomal protein L32polymer606810.01Thermus thermophilus
30A650S ribosomal protein L33polymer829294.91Thermus thermophilus
31A750S ribosomal protein L34polymer475626.61Thermus thermophilus
32A850S ribosomal protein L35polymer647261.91Thermus thermophilus
33A950S ribosomal protein L36polymer364265.21Thermus thermophilus
34BA16S rRNApolymer1522493958.31GenBank (155076)Thermus thermophilus
35BB, BCtRNA Phe (unmodified bases)polymer7624518.62Thermus thermophilus
36B1thrS mRNA operatorpolymer7824992.81
37BE30S ribosomal protein S2polymer25629317.71UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
38BF30S ribosomal protein S3polymer23926751.11UniProt (Q5SHP4)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P80372)
In PDB		Thermus thermophilus
39BG30S ribosomal protein S4polymer20924373.41UniProt (Q5SHR5)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P80373)
In PDB		Thermus thermophilus
40BH30S ribosomal protein S5polymer16217583.41UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
41BI30S ribosomal protein S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilusTS9
42BJ30S ribosomal protein S7polymer15618051.01UniProt (Q5SHN4)
Pfam (PF00177)
UniProt (by SIFTS) (P17291)
In PDB		Thermus thermophilus
43BK30S ribosomal protein S8polymer13815868.61UniProt (Q5SHQ2)
In PDB		Thermus thermophilus
44BL30S ribosomal protein S9polymer12814429.71UniProt (Q5SIB0)
Pfam (PF00380)
UniProt (by SIFTS) (P80374)
In PDB		Thermus thermophilus
45BM30S ribosomal protein S10polymer10511955.01UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
46BN30S ribosomal protein S11polymer12913737.91UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
47BO30S ribosomal protein S12polymer13514920.81UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus HB8
48BP30S ribosomal protein S13polymer12614338.91UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
49BQ30S ribosomal protein S14polymer617158.71UniProt (Q5SHQ1)
In PDB		Thermus thermophilus
50BR30S ribosomal protein S15polymer8910578.41UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
51BS30S ribosomal protein S16polymer8810410.01UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
52BT30S ribosomal protein S17polymer10512324.71UniProt (Q5SHP7)
In PDB		Thermus thermophilus HB8
53BU30S ribosomal protein S18polymer8810244.31UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
54BV30S ribosomal protein S19polymer9310605.51UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
55BW30S ribosomal protein S20polymer10611722.11UniProt (Q5SIH2)
Pfam (PF01649)
UniProt (by SIFTS) (P80380)
In PDB		Thermus thermophilus
56BX30S ribosomal protein Thxpolymer273350.01UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus
Sequence modifications
AB: 0 - 119 (GenBank: 48271)
PDBExternal DatabaseDetails
A -1-insertion
U 120-insertion
AA: 1 - 2906 (GenBank: 48268)
PDBExternal DatabaseDetails
G 494-insertion
BK: 1 - 138 (UniProt: Q5SHQ2)
PDBExternal DatabaseDetails
Asp 25Glu 25conflict
Arg 37Lys 37conflict
Asp 52Glu 52conflict
Val 61Ile 61conflict
Tyr 62His 62conflict
His 81Lys 81conflict
Lys 88Arg 88conflict
Ser 115Pro 115conflict
BT: 1 - 105 (UniProt: Q5SHP7)
PDBExternal DatabaseDetails
Gln 96Glu 96conflict
BW: 1 - 106 (UniProt: Q5SIH2)
PDBExternal DatabaseDetails
Val 41Ile 40conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2308735.8
All*Total formula weight2308735.8
*Water molecules are not included.

225158

PDB entries from 2024-09-18

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