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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V4H

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, CA16S RIBOSOMAL RNApolymer1542499690.02GenBank (33357879)Escherichia coli
2AC, CC30S RIBOSOMAL PROTEIN S3polymer23326031.32UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli
3AD, CD30S RIBOSOMAL PROTEIN S4polymer20623514.22UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli
4AE, CE30S RIBOSOMAL PROTEIN S5polymer16717629.42UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli
5AF, CF30S RIBOSOMAL PROTEIN S6polymer13515727.52UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli
6AG, CG30S RIBOSOMAL PROTEIN S7polymer17920055.22UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli
7AH, CH30S RIBOSOMAL PROTEIN S8polymer13014146.62UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli
8AI, CI30S RIBOSOMAL PROTEIN S9polymer13014886.32UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli
9AJ, CJ30S RIBOSOMAL PROTEIN S10polymer10311755.62UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli
10AK, CK30S RIBOSOMAL PROTEIN S11polymer12913871.02UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli
11AL, CL30S RIBOSOMAL PROTEIN S12polymer12413768.22UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli
12AM, CM30S RIBOSOMAL PROTEIN S13polymer11813128.52UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli
13AN, CN30S RIBOSOMAL PROTEIN S14polymer10111606.62UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli
14AO, CO30S RIBOSOMAL PROTEIN S15polymer8910319.92UniProt (Q8X9M2)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli
15AP, CP30S RIBOSOMAL PROTEIN S16polymer829207.62UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli
16AQ, CQ30S RIBOSOMAL PROTEIN S17polymer849724.52UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli
17AR, CR30S RIBOSOMAL PROTEIN S18polymer759005.52UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli
18AS, CS30S RIBOSOMAL PROTEIN S19polymer9210455.42UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli
19AT, CT30S RIBOSOMAL PROTEIN S20polymer879708.52UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli
20AB, CB30S RIBOSOMAL PROTEIN S2polymer24126781.72UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli
21AU, CU30S RIBOSOMAL PROTEIN S21polymer718524.02UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli
22BA, DA5S RIBOSOMAL RNApolymer12038790.12GenBank (33357928)Escherichia coli
23BB, DB23S RIBOSOMAL RNApolymer2904941612.42GenBank (33357927)Escherichia coli
24BV, DV50S RIBOSOMAL PROTEIN L25polymer9410713.52UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli
25BC, DC50S RIBOSOMAL PROTEIN L2polymer27329923.62UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli
26BD, DD50S RIBOSOMAL PROTEIN L3polymer20922277.52UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli
27BE, DE50S RIBOSOMAL PROTEIN L4polymer20122121.62UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli
28BF, DF50S RIBOSOMAL PROTEIN L5polymer17920333.62UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli
29BG, DG50S RIBOSOMAL PROTEIN L6polymer17718932.82UniProt (P02390)
In PDB		Escherichia coli
30BH, DH50S RIBOSOMAL PROTEIN L9polymer14915789.02UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli
31BJ, DJ50S RIBOSOMAL PROTEIN L13polymer14216050.62UniProt (P02410)
In PDB		Escherichia coli
32BK, DK50S RIBOSOMAL PROTEIN L14polymer12313565.12UniProt (P02411)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
33BL, DL50S RIBOSOMAL PROTEIN L15polymer14415008.52UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli
34BM, DM50S RIBOSOMAL PROTEIN L16polymer13615312.32UniProt (P02414)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli
35BN, DN50S RIBOSOMAL PROTEIN L17polymer12714393.72UniProt (P02416)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
36BO, DO50S RIBOSOMAL PROTEIN L18polymer11712794.72UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli
37BP, DP50S RIBOSOMAL PROTEIN L19polymer11513159.32UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli
38BQ, DQ50S RIBOSOMAL PROTEIN L20polymer11813528.02UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli
39BR, DR50S RIBOSOMAL PROTEIN L21polymer10311586.42UniProt (P02422)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
40BS, DS50S RIBOSOMAL PROTEIN L22polymer11012253.42UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli
41BT, DT50S RIBOSOMAL PROTEIN L23polymer10011222.22UniProt (P02424)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
42BU, DU50S RIBOSOMAL PROTEIN L24polymer10411339.32UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli
43BW, DW50S RIBOSOMAL PROTEIN L27polymer859146.52UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli
44BX, DX50S RIBOSOMAL PROTEIN L29polymer637286.52UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli
45BY, DY50S RIBOSOMAL PROTEIN L30polymer596554.82UniProt (P02430)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
46BZ, DZ50S RIBOSOMAL PROTEIN L31polymer707887.12UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coli
47B0, D050S RIBOSOMAL PROTEIN L32polymer576463.42UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli
48B1, D150S RIBOSOMAL PROTEIN L33polymer556388.62UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli
49B2, D250S RIBOSOMAL PROTEIN L34polymer465397.52UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli
50B3, D350S RIBOSOMAL PROTEIN L35polymer657313.02UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliRIBOSOMAL PROTEIN A
51B4, D450S RIBOSOMAL PROTEIN L36polymer384377.42UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coliRIBOSOMAL PROTEIN B
52BI, DI50S RIBOSOMAL PROTEIN L11polymer14214894.42UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coli
53AA, CA(1S,2R,3S,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-AMINO-4-{[CARBOXY(IMINO)METHYL]AMINO}-2,3,4,6-TETRADEOXY-ALPHA-D-ARABINO-HEXOPYRANOSIDEnon-polymer379.42Chemie (KSG)
54AA, BB, CA, DB, DE...MAGNESIUM IONnon-polymer24.3343Chemie (MG)
55waterwater18.01627Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains104
Total formula weight4291907.3
Non-Polymers*Number of molecules345
Total formula weight9095.3
All*Total formula weight4301002.7
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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