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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V42

Crystal structure of the ribosome at 5.5 A resolution.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA30S 16S RIBOSOMAL RNApolymer1522493958.31GenBank (155076)Thermus thermophilus
2AB, ACTRNA(PHE)polymer7624890.12GenBank (176479)
3ADTRNA(PHE)polymer7423728.11
4A1A- AND P-SITE MESSENGER RNA CODONSpolymer61792.01
5AE30S RIBOSOMAL PROTEIN S2polymer25629317.71UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
6AF30S RIBOSOMAL PROTEIN S3polymer23926751.11UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P80372)
In PDB		Thermus thermophilus
7AG30S RIBOSOMAL PROTEIN S4polymer20924373.41UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
8AH30S RIBOSOMAL PROTEIN S5polymer16217583.41UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
9AI30S RIBOSOMAL PROTEIN S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus
10AJ30S RIBOSOMAL PROTEIN S7polymer15618051.01UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
11AK30S RIBOSOMAL PROTEIN S8polymer13815868.61UniProt (Q5SHQ2)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)
In PDB		Thermus thermophilus
12AL30S RIBOSOMAL PROTEIN S9polymer12814429.71UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
13AM30S RIBOSOMAL PROTEIN S10polymer10511955.01UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
14AN30S RIBOSOMAL PROTEIN S11polymer12913737.91UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
15AO30S RIBOSOMAL PROTEIN S12polymer13514920.81UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
16AP30S RIBOSOMAL PROTEIN S13polymer12614338.91UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
17AQ30S RIBOSOMAL PROTEIN S14polymer617158.71UniProt (Q5SHQ1)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)
In PDB		Thermus thermophilus
18AR30S RIBOSOMAL PROTEIN S15polymer8910578.41UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
19AS30S RIBOSOMAL PROTEIN S16polymer9110808.41GenBank (12056104)
Pfam (PF00886)
UniProt (by SIFTS) (Q5SJH3)
In PDB		Thermus thermophilus
20AT30S RIBOSOMAL PROTEIN S17polymer10512324.71Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)
In PDB		Thermus thermophilus
21AU30S RIBOSOMAL PROTEIN S18polymer8810244.31GenBank (6739549)
Pfam (PF01084)
UniProt (by SIFTS) (Q5SLQ0)
In PDB		Thermus thermophilus
22AV30S RIBOSOMAL PROTEIN S19polymer9310605.51UniProt (P80381)
Pfam (PF00203)
UniProt (by SIFTS) (Q5SHP2)
In PDB		Thermus thermophilus
23AW30S RIBOSOMAL PROTEIN S20polymer10611722.11GenBank (11125386)
Pfam (PF01649)
UniProt (by SIFTS) (P80380)
In PDB		Thermus thermophilus
24AX30S RIBOSOMAL PROTEIN THXpolymer263218.81UniProt (P32193)
Pfam (PF17070)
UniProt (by SIFTS) (Q5SIH3)
In PDB		Thermus thermophilus
25BA50S 23S RIBOSOMAL RNApolymer2916948280.71EMBL (48268)Thermus thermophilus
26BB50S 5S RIBOSOMAL RNApolymer12339846.81GenBank (176261)Thermus thermophilus
27BC50S RIBOSOMAL PROTEIN L1polymer22824736.51UniProt (P27150)
Pfam (PF00687)
UniProt (by SIFTS) (Q5SLP7)
In PDB		Thermus thermophilus
28BD50S RIBOSOMAL PROTEIN L2polymer17819283.41UniProt (P04257)
UniProt (P20276)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
29BE50S RIBOSOMAL PROTEIN L3polymer33837412.51UniProt (P20279)
Pfam (PF00297)
In PDB		Thermus thermophilus
30BF50S RIBOSOMAL PROTEIN L4polymer24626443.11UniProt (P12735)
Pfam (PF00573)
In PDB		Thermus thermophilus
31BG50S RIBOSOMAL PROTEIN L5polymer17619420.51UniProt (P14124)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
32BH50S RIBOSOMAL PROTEIN L6polymer17719202.11UniProt (P02391)
Pfam (PF00347)
In PDB		Thermus thermophilus
33BI, BJ50S RIBOSOMAL PROTEIN L7/L12polymer12813475.52UniProt (P29396)
Pfam (PF16320)
Pfam (PF00542)
In PDB		Thermus thermophilus
34BK50S RIBOSOMAL PROTEIN L9polymer14916341.01UniProt (P02417)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
35BL50S RIBOSOMAL PROTEIN L11polymer14115111.91UniProt (P29395)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Thermus thermophilus
36BM50S RIBOSOMAL PROTEIN L13polymer14516249.21UniProt (P29198)
Pfam (PF00572)
In PDB		Thermus thermophilus
37BN50S RIBOSOMAL PROTEIN L14polymer12213369.61UniProt (P04450)
Pfam (PF00238)
In PDB		Thermus thermophilus
38BO50S RIBOSOMAL PROTEIN L15polymer16417874.21UniProt (P12737)
Pfam (PF00828)
In PDB		Thermus thermophilus
39BP50S RIBOSOMAL PROTEIN L16polymer13815313.31Pfam (PF00252)
UniProt (by SIFTS) (A0A0X1KGB2)
In PDB		Thermus thermophilus
40BQ50S RIBOSOMAL PROTEIN L18polymer18620509.71UniProt (P14123)
Pfam (PF17144)
In PDB		Thermus thermophilus
41BR50S RIBOSOMAL PROTEIN L19polymer667233.71UniProt (P14116)
Pfam (PF01246)
In PDB		Thermus thermophilus
42BS50S RIBOSOMAL PROTEIN L22polymer11312808.11UniProt (P48286)
Pfam (PF00237)
UniProt (by SIFTS) (Q5SHP3)
In PDB		Thermus thermophilus
43BT50S RIBOSOMAL PROTEIN L23polymer849481.31UniProt (P12732)
Pfam (PF00276)
In PDB		Thermus thermophilus
44BU50S RIBOSOMAL PROTEIN L24polymer11913539.81UniProt (P10972)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Thermus thermophilus
45BV50S RIBOSOMAL PROTEIN L25polymer9410713.51UniProt (P02426)
In PDB		Thermus thermophilus
46BW50S RIBOSOMAL PROTEIN L29polymer707758.71UniProt (P10971)
Pfam (PF00831)
In PDB		Thermus thermophilus
47BX50S RIBOSOMAL PROTEIN L30polymer606799.11UniProt (P74909)
Pfam (PF00327)
UniProt (by SIFTS) (Q5SHQ6)
In PDB		Thermus thermophilus
Sequence modifications
AB, AC: 1 - 76 (GenBank: 176479)
PDBExternal DatabaseDetails
2mg 10G 10modified residue
H2u 16U 16modified residue
H2u 17U 17modified residue
M2g 26G 26modified residue
Omc 32C 32modified residue
Omg 34G 34modified residue
Yg 37G 37modified residue
Psu 39U 39modified residue
5mc 40C 40modified residue
7mg 46G 46modified residue
5mc 49C 49modified residue
5mu 54U 54modified residue
Psu 55U 55modified residue
1ma 58A 58modified residue
BA: 1 - 2906 (EMBL: 48268)
PDBExternal DatabaseDetails
G 493-insertion
BB: 0 - 120 (GenBank: 176261)
PDBExternal DatabaseDetails
A -1-insertion
BD: 60 - 196 (UniProt: P04257)
BD: 197 - 237 (UniProt: P20276)
BE: 1 - 337 (UniProt: P20279)
PDBExternal DatabaseDetails
Ser 113Asp 114conflict
Asp 114Val 115conflict
Arg 115Pro 116conflict
Leu 116Glu 117conflict
Ala 119Asp 120conflict
Leu 120Pro 121conflict
Ile 122Ala 123conflict
Val 123Ala 124conflict
Asp 125Glu 126conflict
BF: 1 - 246 (UniProt: P12735)
PDBExternal DatabaseDetails
Glu 2Gln 2conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains49
Total formula weight2203915.3
All*Total formula weight2203915.3
*Water molecules are not included.

221716

PDB entries from 2024-06-26

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