4V3P
The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | Sa | G protein beta subunit | polymer | 380 | 41794.8 | 1 | UniProt (Q8LNY6) Pfam (PF00400) In PDB | Triticum aestivum (bread wheat) | |
| 2 | SA | 40S ribosomal protein SA | polymer | 260 | 28723.6 | 1 | Triticum aestivum (bread wheat) | ||
| 3 | SB | Putative 40S ribosomal protein S3 | polymer | 208 | 23255.1 | 1 | UniProt (Q8L804) Pfam (PF07650) Pfam (PF00189) In PDB | Triticum aestivum (bread wheat) | |
| 4 | SD | 40S ribosomal protein S4 | polymer | 200 | 22822.6 | 1 | Triticum aestivum (bread wheat) | ||
| 5 | SE | 40S ribosomal protein S2 | polymer | 263 | 28859.6 | 1 | Triticum aestivum (bread wheat) | ||
| 6 | SF | 40S ribosomal protein S5 | polymer | 191 | 21249.5 | 1 | Triticum aestivum (bread wheat) | ||
| 7 | SI | 40S ribosomal protein S16 | polymer | 126 | 14466.1 | 1 | Triticum aestivum (bread wheat) | ||
| 8 | SJ | 40S ribosomal protein S20 | polymer | 128 | 14070.4 | 1 | Triticum aestivum (bread wheat) | ||
| 9 | SK | 40S ribosomal protein S14 | polymer | 119 | 12858.8 | 1 | Triticum aestivum (bread wheat) | ||
| 10 | SL | 40S ribosomal protein S23 | polymer | 142 | 15696.5 | 1 | Triticum aestivum (bread wheat) | ||
| 11 | SM | 40S ribosomal protein S18 | polymer | 152 | 17702.7 | 1 | Triticum aestivum (bread wheat) | ||
| 12 | SO | 40S ribosomal protein S13-1 | polymer | 121 | 13904.5 | 1 | Triticum aestivum (bread wheat) | ||
| 13 | SQ | 40S ribosomal protein S17-4 | polymer | 141 | 16461.1 | 1 | Triticum aestivum (bread wheat) | ||
| 14 | SP | 40S ribosomal protein S11 | polymer | 85 | 9809.4 | 1 | Triticum aestivum (bread wheat) | ||
| 15 | SS | 40S ribosomal protein S19 | polymer | 146 | 16414.8 | 1 | Triticum aestivum (bread wheat) | ||
| 16 | SR | 40S ribosomal protein S15 | polymer | 91 | 10153.1 | 1 | Triticum aestivum (bread wheat) | ||
| 17 | SV | 40S ribosomal protein S25 | polymer | 100 | 11071.8 | 1 | Triticum aestivum (bread wheat) | ||
| 18 | SW | 40S WHEAT GERM RIBOSOME1 | polymer | 92 | 7847.7 | 1 | Triticum aestivum (bread wheat) | ||
| 19 | SY | 40S ribosomal protein S28 | polymer | 58 | 6535.7 | 1 | Triticum aestivum (bread wheat) | ||
| 20 | SZ | 40S ribosomal protein S30 | polymer | 62 | 6953.3 | 1 | Triticum aestivum (bread wheat) | ||
| 21 | Sc | Unknown 40S wheat germ ribosome protein 2 | polymer | 25 | 2145.6 | 1 | Triticum aestivum (bread wheat) | ||
| 22 | Sb | Unknown 40S wheat germ ribosome protein 3 | polymer | 36 | 3081.8 | 1 | Triticum aestivum (bread wheat) | ||
| 23 | SU | Unknown 40S wheat germ ribosome protein 3 | polymer | 98 | 11259.2 | 1 | Triticum aestivum (bread wheat) | ||
| 24 | SX | 40S ribosomal protein S27 | polymer | 50 | 5438.3 | 1 | Triticum aestivum (bread wheat) | ||
| 25 | SC | 40S ribosomal protein S9 | polymer | 195 | 22629.2 | 1 | Triticum aestivum (bread wheat) | ||
| 26 | SG | Unknown 40S wheat germ ribosome protein 4 | polymer | 143 | 12188.0 | 1 | Triticum aestivum (bread wheat) | ||
| 27 | SH | Ribosomal protein S15 | polymer | 130 | 14825.4 | 1 | Triticum aestivum (bread wheat) | ||
| 28 | SN | 40S ribosomal protein S29 | polymer | 48 | 5465.4 | 1 | UniProt (Q5I7K3) Pfam (PF00253) In PDB | Triticum aestivum (bread wheat) | |
| 29 | ST | 40S ribosomal protein S21 | polymer | 82 | 9266.4 | 1 | Triticum aestivum (bread wheat) | ||
| 30 | S3 | 40S WHEAT GERM RIBOSOME protein 4 | polymer | 11 | 3498.2 | 1 | Triticum aestivum (bread wheat) | ||
| 31 | S2 | 40S ribosomal RNA | polymer | 75 | 24135.3 | 1 | Triticum aestivum (bread wheat) | ||
| 32 | S1 | 18S ribosomal RNA | polymer | 1743 | 562064.9 | 1 | Triticum aestivum (bread wheat) | ||
| 33 | L1 | 26S ribosomal RNA | polymer | 3352 | 1084820.4 | 1 | Triticum aestivum (bread wheat) | ||
| 34 | L3 | 5S ribosomal RNA | polymer | 120 | 38717.0 | 1 | GenBank (21661) | Triticum aestivum (bread wheat) | |
| 35 | L2 | 5.8S ribosomal RNA | polymer | 159 | 51270.5 | 1 | GenBank (17016972) | Triticum aestivum (bread wheat) | |
| 36 | LA | Ribosomal protein | polymer | 216 | 24604.2 | 1 | UniProt (Q5I7L3) Pfam (PF00687) In PDB | Triticum aestivum (bread wheat) | |
| 37 | LB | 60S ribosomal protein L2 | polymer | 255 | 27693.0 | 1 | Triticum aestivum (bread wheat) | ||
| 38 | LE | Ribosomal protein L11 | polymer | 170 | 19717.9 | 1 | UniProt (Q5I7L2) Pfam (PF00281) Pfam (PF00673) In PDB | Triticum aestivum (bread wheat) | |
| 39 | LF | 60S ribosomal protein L9 | polymer | 190 | 21382.8 | 1 | Triticum aestivum (bread wheat) | ||
| 40 | LH | 60S ribosomal protein L7a | polymer | 201 | 22910.3 | 1 | Triticum aestivum (bread wheat) | ||
| 41 | LM | Ribosomal Pr 117 | polymer | 140 | 15040.9 | 1 | UniProt (Q7X9K1) Pfam (PF00238) UniProt (by SIFTS) (Q5I7K4) In PDB | Triticum aestivum (bread wheat) | |
| 42 | LP | Ribosomal protein L15 | polymer | 194 | 23118.1 | 1 | Triticum aestivum (bread wheat) | ||
| 43 | LO | 60S ribosomal protein L27a-3 | polymer | 144 | 15834.8 | 1 | Triticum aestivum (bread wheat) | ||
| 44 | LR | 60S ribosomal protein L18 | polymer | 163 | 18349.7 | 1 | UniProt (Q5I7L0) Pfam (PF17135) In PDB | Triticum aestivum (bread wheat) | |
| 45 | LQ | 60S ribosomal protein L5 | polymer | 304 | 34723.2 | 1 | Triticum aestivum (bread wheat) | ||
| 46 | LT | Ribosomal protein L19 | polymer | 189 | 22478.8 | 1 | UniProt (Q7XY20) Pfam (PF01280) In PDB | Triticum aestivum (bread wheat) | |
| 47 | LU | 60S ribosomal protein L21 | polymer | 164 | 18691.7 | 1 | UniProt (W5EIT2) In PDB | Triticum aestivum (bread wheat) | |
| 48 | LV | 60S ribosomal protein L17 | polymer | 171 | 19536.5 | 1 | Triticum aestivum (bread wheat) | ||
| 49 | LX | 60S ribosomal protein L23a | polymer | 122 | 14047.7 | 1 | Triticum aestivum (bread wheat) | ||
| 50 | LZ | 60S ribosomal protein L24 | polymer | 75 | 9050.8 | 1 | Triticum aestivum (bread wheat) | ||
| 51 | LY | 60S ribosomal protein L26 | polymer | 130 | 14966.6 | 1 | Triticum aestivum (bread wheat) | ||
| 52 | Lb | 60S ribosomal protein l28 | polymer | 73 | 8227.6 | 1 | Triticum aestivum (bread wheat) | ||
| 53 | Ld | 60S ribosomal protein L29 | polymer | 23 | 2830.1 | 1 | Triticum aestivum (bread wheat) | ||
| 54 | Lf | 60S ribosomal protein L30 | polymer | 112 | 12294.4 | 1 | UniProt (Q5I7K9) Pfam (PF01248) In PDB | Triticum aestivum (bread wheat) | |
| 55 | Lg | 60S ribosomal protein L31 | polymer | 120 | 13719.0 | 1 | Triticum aestivum (bread wheat) | ||
| 56 | Lh | Ribosomal L32 | polymer | 133 | 15740.7 | 1 | Triticum aestivum (bread wheat) | ||
| 57 | Ll | Ribosomal protein L37 | polymer | 94 | 10823.7 | 1 | Triticum aestivum (bread wheat) | ||
| 58 | Ln | 60S ribosomal protein L38 | polymer | 69 | 8053.6 | 1 | Triticum aestivum (bread wheat) | ||
| 59 | Lo | Ribosomal protein L39 | polymer | 51 | 6528.8 | 1 | UniProt (Q5I7K7) Pfam (PF00832) In PDB | Triticum aestivum (bread wheat) | |
| 60 | Lr | 60S ribosomal protein L44 | polymer | 105 | 12174.4 | 1 | Triticum aestivum (bread wheat) | ||
| 61 | Lq | Unknown 60S wheat germ ribosome protein 1 | polymer | 25 | 3445.4 | 1 | Triticum aestivum (bread wheat) | ||
| 62 | Ly, Lx | Unknown 60S wheat germ ribosome protein 2 | polymer | 20 | 1720.1 | 2 | Triticum aestivum (bread wheat) | ||
| 63 | Lz | Unknown 60S wheat germ ribosome protein 3 | polymer | 14 | 1209.5 | 1 | Triticum aestivum (bread wheat) | ||
| 64 | LG | 60S ribosomal protein L6 | polymer | 219 | 24589.8 | 1 | UniProt (Q5I7L4) Pfam (PF01159) In PDB | Triticum aestivum (bread wheat) | |
| 65 | LL | Unknown 60S wheat germ ribosome protein 5 | polymer | 182 | 15507.1 | 1 | Triticum aestivum (bread wheat) | ||
| 66 | LN | Unknown 60S wheat germ ribosome protein 6 | polymer | 134 | 15418.4 | 1 | Triticum aestivum (bread wheat) | ||
| 67 | LS | 60S ribosomal protein L18a | polymer | 167 | 20148.7 | 1 | Triticum aestivum (bread wheat) | ||
| 68 | LW | 60S ribosomal protein L22 | polymer | 108 | 12298.3 | 1 | Triticum aestivum (bread wheat) | ||
| 69 | La | 60S ribosomal protein L27 | polymer | 99 | 11154.4 | 1 | Triticum aestivum (bread wheat) | ||
| 70 | Li | Ribosomal protein l34 | polymer | 119 | 13808.4 | 1 | UniProt (Q5I7K8) Pfam (PF01199) In PDB | Triticum aestivum (bread wheat) | |
| 71 | Lj | ribosomal protein L35A | polymer | 104 | 11858.8 | 1 | Triticum aestivum (bread wheat) | ||
| 72 | Lk | 60S ribosomal protein L36 | polymer | 77 | 8758.5 | 1 | UniProt (Q5I7L5) Pfam (PF01158) In PDB | Triticum aestivum (bread wheat) | |
| 73 | Lp | Ubiquitin-60S ribosomal protein L40-1 | polymer | 41 | 4973.0 | 1 | Triticum aestivum (bread wheat) | ||
| 74 | LJ | 60S ribosomal protein L12 | polymer | 128 | 13754.2 | 1 | Triticum aestivum (bread wheat) | ||
| 75 | Lt, Lu | Ribosomal protein P1 | polymer | 58 | 6155.3 | 2 | UniProt (Q5I7K5) Pfam (PF00428) In PDB | Triticum aestivum (bread wheat) | Uncharacterized protein |
| 76 | Lv, Lw | 60S acidic ribosomal protein P2A | polymer | 59 | 6355.3 | 2 | UniProt (W5AP46) Pfam (PF00428) In PDB | Triticum aestivum (bread wheat) | |
| 77 | Lc | 60S ribosomal protein L35 | polymer | 124 | 14401.0 | 1 | UniProt (Q8L805) Pfam (PF00831) In PDB | Triticum aestivum (bread wheat) | |
| 78 | Le | Ribosomal protein L7 | polymer | 244 | 28175.1 | 1 | UniProt (Q5I7K6) Pfam (PF08079) Pfam (PF00327) In PDB | Triticum aestivum (bread wheat) | |
| 79 | Ls | 60S acidic ribosomal protein P0 | polymer | 262 | 28410.0 | 1 | Triticum aestivum (bread wheat) | ||
| 80 | LC | Ribosomal protein L3 | polymer | 389 | 44720.4 | 1 | UniProt (Q7X744) Pfam (PF00297) In PDB | Triticum aestivum (bread wheat) | Ribosomal protein L3-A1,Ribosomal protein L3A-1,Uncharacterized protein |
| 81 | LD | 60S ribosomal protein L4/L1 | polymer | 372 | 41218.9 | 1 | Triticum aestivum (bread wheat) | ||
| 82 | LK | Ribosomal protein L13a | polymer | 206 | 23581.2 | 1 | UniProt (Q5I7L1) Pfam (PF00572) In PDB | Triticum aestivum (bread wheat) | Uncharacterized protein |
| 83 | Lm | 60S ribosomal protein L37a, expressed | polymer | 92 | 10266.1 | 1 | UniProt (D8L9P6) Pfam (PF01780) In PDB | Triticum aestivum (bread wheat) | Chromosome 3B,genomic scaffold,cultivar Chinese Spring,Uncharacterized protein |
| 84 | LI | 60S ribosomal protein L10-1 | polymer | 184 | 21290.1 | 1 | Triticum aestivum (bread wheat) |
Sequence modifications
L2: 6 - 164 (GenBank: 17016972)
LT: 1 - 189 (UniProt: Q7XY20)
LU: 1 - 164 (UniProt: W5EIT2)
| PDB | External Database | Details |
|---|---|---|
| G 136 | C 354 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Gly 184 | Unk 184 | variant |
| PDB | External Database | Details |
|---|---|---|
| Trp 65 | Cys 135 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 87 |
| Total formula weight | 3001444.6 | |
| All* | Total formula weight | 3001444.6 |
