4V3K
RNF38-UbcH5B-UB complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, D | UBIQUITIN-CONJUGATING ENZYME E2 D2 | polymer | 146 | 16720.2 | 2 | UniProt (P62837) Pfam (PF00179) In PDB | HOMO SAPIENS (HUMAN) | UBIQUITIN CARRIER PROTEIN D2, UBIQUITIN-CONJUGATING ENZYME E2(17)KB 2, UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2, UBIQUITIN-PROTEIN LIGASE D2, P53-REGULATED UBIQUITIN-CONJUGATING ENZYME 1, UBCH5B |
2 | B, E | POLYUBIQUITIN-C | polymer | 81 | 8922.1 | 2 | UniProt (P0CG48) Pfam (PF00240) In PDB | HOMO SAPIENS (HUMAN) | UBIQUITIN |
3 | C, F | E3 UBIQUITIN-PROTEIN LIGASE RNF38 | polymer | 79 | 9135.3 | 2 | UniProt (Q9H0F5) Pfam (PF13639) In PDB | HOMO SAPIENS (HUMAN) | RING FINGER PROTEIN 38, RNF38 |
4 | A, D | CHLORIDE ION | non-polymer | 35.5 | 6 | Chemie (CL) | |||
5 | A, B, D, E | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
6 | C, F | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
7 | water | water | 18.0 | 368 | Chemie (HOH) |
Sequence modifications
A, D: 2 - 147 (UniProt: P62837)
B, E: 1 - 76 (UniProt: P0CG48)
C, F: 389 - 465 (UniProt: Q9H0F5)
PDB | External Database | Details |
---|---|---|
Arg 22 | Ser 22 | engineered mutation |
Lys 85 | Cys 85 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Gly -4 | - | expression tag |
Ser -3 | - | expression tag |
Gly -2 | - | expression tag |
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly 387 | - | expression tag |
Ser 388 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 69555.3 | |
Non-Polymers* | Number of molecules | 15 |
Total formula weight | 784.7 | |
All* | Total formula weight | 70340.0 |