4UO6
Structure of the A_Canine_Colorado_17864_06 H3 haemagglutinin in complex with Sialyl Lewis X
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | H3 HAEMAGGLUTININ HA1 CHAIN | polymer | 328 | 36346.0 | 1 | UniProt (E0UVR5) Pfam (PF00509) | INFLUENZA A VIRUS (A/CANINE/COLORADO/17864/2006(H3N8)) | HEMAGGLUTININ |
| 2 | B (B) | H3 HAEMAGGLUTININ HA2 CHAIN | polymer | 175 | 20273.4 | 1 | UniProt (E0UVR5) Pfam (PF00509) | INFLUENZA A VIRUS (A/CANINE/COLORADO/17864/2006(H3N8)) | HEMAGGLUTININ |
| 3 | C (C) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 4 | D (D) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 5 | E (E) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
| 6 | F (F) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 820.7 | 1 | In PDB BIRD (PRD_900121) GlyTouCan (G00054MO) | Sialyl-Lewis X antigen, beta anomer | ||
| 7 | G, H (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 8 | I, J, K (A, B) | SULFATE ION | non-polymer | 96.1 | 3 | Chemie (SO4) | |||
| 9 | L, M (A, B) | water | water | 18.0 | 47 | Chemie (HOH) |
Sequence modifications
B: 1 - 172 (UniProt: E0UVR5)
| PDB | External Database | Details |
|---|---|---|
| Ser 173 | - | expression tag |
| Gly 174 | - | expression tag |
| Arg 175 | - | expression tag |
| Glu 131 | Asp 475 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 56619.4 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 2742.5 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 730.6 | |
| All* | Total formula weight | 60092.5 |
