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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4UG0

STRUCTURE OF THE HUMAN 80S RIBOSOME

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1L528S ribosomal RNApolymer50701640238.11HOMO SAPIENS (HUMAN)RNA (5070-MER)
2L75S ribosomal RNApolymer12138998.11HOMO SAPIENS (HUMAN)RNA (121-MER)
3L85.8S ribosomal RNApolymer15750449.81HOMO SAPIENS (HUMAN)RNA (157-MER)
4LA60S RIBOSOMAL PROTEIN L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
In PDB		HOMO SAPIENS (HUMAN)
5LB60S RIBOSOMAL PROTEIN L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
In PDB		HOMO SAPIENS (HUMAN)HIV-1 TAR RNA-binding protein B,TARBP-B
6LC60S RIBOSOMAL PROTEIN L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
In PDB		HOMO SAPIENS (HUMAN)60S ribosomal protein L1
7LD60S RIBOSOMAL PROTEIN L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
In PDB		HOMO SAPIENS (HUMAN)
8LE60S RIBOSOMAL PROTEIN L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
In PDB		HOMO SAPIENS (HUMAN)Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
9LF60S RIBOSOMAL PROTEIN L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
In PDB		HOMO SAPIENS (HUMAN)
10LG60S RIBOSOMAL PROTEIN L7Apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
In PDB		HOMO SAPIENS (HUMAN)PLA-X polypeptide,Surfeit locus protein 3
11LH60S RIBOSOMAL PROTEIN L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
In PDB		HOMO SAPIENS (HUMAN)
12LI60S RIBOSOMAL PROTEIN L10-LIKEpolymer21424570.91UniProt (Q96L21)
Pfam (PF00252)
In PDB		HOMO SAPIENS (HUMAN)
13LJ60S RIBOSOMAL PROTEIN L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
In PDB		HOMO SAPIENS (HUMAN)CLL-associated antigen KW-12
14LL60S RIBOSOMAL PROTEIN L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
In PDB		HOMO SAPIENS (HUMAN)Breast basic conserved protein 1
15LM60S RIBOSOMAL PROTEIN L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
In PDB		HOMO SAPIENS (HUMAN)CAG-ISL 7
16LN60S RIBOSOMAL PROTEIN L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
In PDB		HOMO SAPIENS (HUMAN)
17LO60S RIBOSOMAL PROTEIN L13Apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
In PDB		HOMO SAPIENS (HUMAN)23 kDa highly basic protein
18LP60S RIBOSOMAL PROTEIN L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
In PDB		HOMO SAPIENS (HUMAN)60S ribosomal protein L23,PD-1
19LQ60S RIBOSOMAL PROTEIN L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
In PDB		HOMO SAPIENS (HUMAN)
20LR60S RIBOSOMAL PROTEIN L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
In PDB		HOMO SAPIENS (HUMAN)
21LS60S RIBOSOMAL PROTEIN L18Apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
In PDB		HOMO SAPIENS (HUMAN)
22LT60S RIBOSOMAL PROTEIN L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
In PDB		HOMO SAPIENS (HUMAN)
23LU60S RIBOSOMAL PROTEIN L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
In PDB		HOMO SAPIENS (HUMAN)EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15
24LV60S RIBOSOMAL PROTEIN L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
In PDB		HOMO SAPIENS (HUMAN)60S ribosomal protein L17
25LW60S RIBOSOMAL PROTEIN L24polymer15717825.11UniProt (P83731)
Pfam (PF01246)
In PDB		HOMO SAPIENS (HUMAN)60S ribosomal protein L30
26LX60S RIBOSOMAL PROTEIN L23Apolymer15617740.21UniProt (P62750)
Pfam (PF00276)
Pfam (PF03939)
In PDB		HOMO SAPIENS (HUMAN)
27LY60S RIBOSOMAL PROTEIN L26polymer14517303.41UniProt (P61254)
Pfam (PF00467)
Pfam (PF16906)
In PDB		HOMO SAPIENS (HUMAN)
28LZ60S RIBOSOMAL PROTEIN L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
In PDB		HOMO SAPIENS (HUMAN)
29La60S RIBOSOMAL PROTEIN L27Apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
In PDB		HOMO SAPIENS (HUMAN)
30Lb60S RIBOSOMAL PROTEIN L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
In PDB		HOMO SAPIENS (HUMAN)Cell surface heparin-binding protein HIP
31Lc60S RIBOSOMAL PROTEIN L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
In PDB		HOMO SAPIENS (HUMAN)
32Ld60S RIBOSOMAL PROTEIN L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
In PDB		HOMO SAPIENS (HUMAN)
33Le60S RIBOSOMAL PROTEIN L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
In PDB		HOMO SAPIENS (HUMAN)
34Lf60S RIBOSOMAL PROTEIN L35Apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
In PDB		HOMO SAPIENS (HUMAN)Cell growth-inhibiting gene 33 protein
35Lg60S RIBOSOMAL PROTEIN L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
In PDB		HOMO SAPIENS (HUMAN)
36Lh60S RIBOSOMAL PROTEIN L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
In PDB		HOMO SAPIENS (HUMAN)
37Li60S RIBOSOMAL PROTEIN L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
In PDB		HOMO SAPIENS (HUMAN)
38Lj60S RIBOSOMAL PROTEIN L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
In PDB		HOMO SAPIENS (HUMAN)G1.16
39Lk60S RIBOSOMAL PROTEIN L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
In PDB		HOMO SAPIENS (HUMAN)
40Ll60S RIBOSOMAL PROTEIN L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
In PDB		HOMO SAPIENS (HUMAN)
41LmUBIQUITIN-60S RIBOSOMAL PROTEIN L40polymer12814758.41UniProt (P62987)
Pfam (PF00240)
Pfam (PF01020)
In PDB		HOMO SAPIENS (HUMAN)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
42Ln60S RIBOSOMAL PROTEIN L41polymer253473.51UniProt (P62945)
Pfam (PF05162)
In PDB		HOMO SAPIENS (HUMAN)HG12
43Lo60S RIBOSOMAL PROTEIN L36Apolymer10612477.01UniProt (P83881)
Pfam (PF00935)
In PDB		HOMO SAPIENS (HUMAN)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein
44Lp60S RIBOSOMAL PROTEIN L37Apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
In PDB		HOMO SAPIENS (HUMAN)
45Lr60S RIBOSOMAL PROTEIN L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
In PDB		HOMO SAPIENS (HUMAN)
46Lz60S RIBOSOMAL PROTEIN L10Apolymer21724879.41UniProt (P62906)
Pfam (PF00687)
In PDB		HOMO SAPIENS (HUMAN)CSA-19,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6
47S218S ribosomal RNApolymer1869602752.91HOMO SAPIENS (HUMAN)RNA (1869-MER)
48S6HUMAN INITIATOR MET-TRNA-Ipolymer7524231.51GenBank (174924)HOMO SAPIENS (HUMAN)
49SA40S RIBOSOMAL PROTEIN SApolymer29532883.91UniProt (P08865)
Pfam (PF00318)
Pfam (PF16122)
In PDB		HOMO SAPIENS (HUMAN)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4
50SB40S RIBOSOMAL PROTEIN S3Apolymer26430002.11UniProt (P61247)
Pfam (PF01015)
In PDB		HOMO SAPIENS (HUMAN)v-fos transformation effector protein,Fte-1
51SD40S RIBOSOMAL PROTEIN S3polymer24326729.41UniProt (P23396)
Pfam (PF07650)
Pfam (PF00189)
In PDB		HOMO SAPIENS (HUMAN)
52SE40S RIBOSOMAL PROTEIN S4, X ISOFORMpolymer26329654.91UniProt (P62701)
Pfam (PF00467)
Pfam (PF16121)
Pfam (PF08071)
Pfam (PF00900)
In PDB		HOMO SAPIENS (HUMAN)SCR10,Single copy abundant mRNA protein
53SF40S RIBOSOMAL PROTEIN S5polymer20422913.51UniProt (P46782)
Pfam (PF00177)
In PDB		HOMO SAPIENS (HUMAN)
54SH40S RIBOSOMAL PROTEIN S7polymer19422168.91UniProt (P62081)
Pfam (PF01251)
In PDB		HOMO SAPIENS (HUMAN)
55SI40S RIBOSOMAL PROTEIN S8polymer20824263.41UniProt (P62241)
Pfam (PF01201)
In PDB		HOMO SAPIENS (HUMAN)
56SK40S RIBOSOMAL PROTEIN S10polymer16518933.81UniProt (P46783)
Pfam (PF03501)
In PDB		HOMO SAPIENS (HUMAN)
57SL40S RIBOSOMAL PROTEIN S11polymer15818468.81UniProt (P62280)
Pfam (PF16205)
Pfam (PF00366)
In PDB		HOMO SAPIENS (HUMAN)
58SP40S RIBOSOMAL PROTEIN S15polymer14517076.21UniProt (P62841)
Pfam (PF00203)
In PDB		HOMO SAPIENS (HUMAN)RIG protein
59SQ40S RIBOSOMAL PROTEIN S16polymer14616477.41UniProt (P62249)
Pfam (PF00380)
In PDB		HOMO SAPIENS (HUMAN)
60SR40S RIBOSOMAL PROTEIN S17-LIKEpolymer13515578.21UniProt (P0CW22)
Pfam (PF00833)
UniProt (by SIFTS) (P08708)
In PDB		HOMO SAPIENS (HUMAN)
61SS40S RIBOSOMAL PROTEIN S18polymer15217759.81UniProt (P62269)
Pfam (PF00416)
In PDB		HOMO SAPIENS (HUMAN)Ke-3,Ke3
62ST40S RIBOSOMAL PROTEIN S19polymer14516091.61UniProt (P39019)
Pfam (PF01090)
In PDB		HOMO SAPIENS (HUMAN)
63SU40S RIBOSOMAL PROTEIN S20polymer11913398.81UniProt (P60866)
Pfam (PF00338)
In PDB		HOMO SAPIENS (HUMAN)
64SV40S RIBOSOMAL PROTEIN S21polymer839124.41UniProt (P63220)
Pfam (PF01249)
In PDB		HOMO SAPIENS (HUMAN)
65SX40S RIBOSOMAL PROTEIN S23polymer14315844.71UniProt (P62266)
Pfam (PF00164)
In PDB		HOMO SAPIENS (HUMAN)
66Sa40S RIBOSOMAL PROTEIN S26polymer11513047.51UniProt (P62854)
Pfam (PF01283)
In PDB		HOMO SAPIENS (HUMAN)
67Sc40S RIBOSOMAL PROTEIN S28polymer697855.11UniProt (P62857)
Pfam (PF01200)
In PDB		HOMO SAPIENS (HUMAN)
68Sd40S RIBOSOMAL PROTEIN S29polymer566690.81UniProt (P62273)
Pfam (PF00253)
In PDB		HOMO SAPIENS (HUMAN)
69SfUBIQUITIN-40S RIBOSOMAL PROTEIN S27Apolymer15618004.01UniProt (P62979)
Pfam (PF00240)
Pfam (PF01599)
In PDB		HOMO SAPIENS (HUMAN)Ubiquitin carboxyl extension protein 80
70SgGUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1polymer31735115.71UniProt (P63244)
Pfam (PF00400)
In PDB		HOMO SAPIENS (HUMAN)Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1
71SC40S RIBOSOMAL PROTEIN S2polymer29331376.51UniProt (P15880)
Pfam (PF00333)
Pfam (PF03719)
In PDB		HOMO SAPIENS (HUMAN)40S ribosomal protein S4,Protein LLRep3
72SG40S RIBOSOMAL PROTEIN S6polymer24928751.91UniProt (P62753)
Pfam (PF01092)
In PDB		HOMO SAPIENS (HUMAN)Phosphoprotein NP33
73SJ40S RIBOSOMAL PROTEIN S9polymer19422641.61UniProt (P46781)
Pfam (PF00163)
Pfam (PF01479)
In PDB		HOMO SAPIENS (HUMAN)
74SM40S RIBOSOMAL PROTEINpolymer13214548.91HOMO SAPIENS (HUMAN)
75SN40S RIBOSOMAL PROTEIN S13polymer15117259.41UniProt (P62277)
Pfam (PF08069)
Pfam (PF00312)
In PDB		HOMO SAPIENS (HUMAN)
76SO40S RIBOSOMAL PROTEIN S14polymer15116302.81UniProt (P62263)
Pfam (PF00411)
In PDB		HOMO SAPIENS (HUMAN)
77SW40S RIBOSOMAL PROTEIN S15Apolymer13014865.61UniProt (P62244)
Pfam (PF00410)
In PDB		HOMO SAPIENS (HUMAN)
78SY40S RIBOSOMAL PROTEIN S24polymer13315463.31UniProt (P62847)
Pfam (PF01282)
In PDB		HOMO SAPIENS (HUMAN)
79SZ40S RIBOSOMAL PROTEIN S25polymer12513776.21UniProt (P62851)
Pfam (PF03297)
In PDB		HOMO SAPIENS (HUMAN)
80Sb40S RIBOSOMAL PROTEIN S27polymer849480.21UniProt (P42677)
Pfam (PF01667)
In PDB		HOMO SAPIENS (HUMAN)Metallopan-stimulin 1,MPS-1
81Se40S RIBOSOMAL PROTEIN S30polymer596668.91UniProt (P62861)
Pfam (PF04758)
In PDB		HOMO SAPIENS (HUMAN)
82L5, L7, S2, L8, LA...MAGNESIUM IONnon-polymer24.3239Chemie (MG)
83Lg, Lj, Sa, Lm, Lo...ZINC IONnon-polymer65.46Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains81
Total formula weight3829315.6
Non-Polymers*Number of molecules245
Total formula weight6201.3
All*Total formula weight3835517.0
*Water molecules are not included.

218500

PDB entries from 2024-04-17

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