4RN0
Crystal structure of S39D HDAC8 in complex with a largazole analogue.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Histone deacetylase 8 | polymer | 389 | 43260.0 | 2 | UniProt (Q9BY41) Pfam (PF00850) In PDB | Homo sapiens (human) | HD8 |
2 | A, B | (5R,8S,11S)-5-methyl-8-(propan-2-yl)-11-[(1E)-4-sulfanylbut-1-en-1-yl]-3,17-dithia-7,10,14,19,20-pentaazatricyclo[14.2.1.1~2,5~]icosa-1(18),2(20),16(19)-triene-6,9,13-trione | non-polymer | 495.7 | 2 | Chemie (L6G) | |||
3 | A, B | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
4 | A, B | POTASSIUM ION | non-polymer | 39.1 | 4 | Chemie (K) | |||
5 | A | IMIDAZOLE | non-polymer | 69.1 | 1 | Chemie (IMD) | |||
6 | A | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
7 | water | water | 18.0 | 740 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 377 (UniProt: Q9BY41)
PDB | External Database | Details |
---|---|---|
Asp 39 | Ser 39 | engineered mutation |
Ile 378 | - | expression tag |
Glu 379 | - | expression tag |
Gly 380 | - | expression tag |
Arg 381 | - | expression tag |
Gly 382 | - | expression tag |
Ser 383 | - | expression tag |
His 384 | - | expression tag |
His 385 | - | expression tag |
His 386 | - | expression tag |
His 387 | - | expression tag |
His 388 | - | expression tag |
His 389 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 86520.0 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 1439.8 | |
All* | Total formula weight | 87959.8 |