4POT
Structure of Human Polyomavirus 9 VP1 pentamer in complex with N-glycolylneuraminic acid containing 3'-sialyllactosamine
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E... | VP1 | polymer | 278 | 30158.0 | 10 | UniProt (E9NQ90) Pfam (PF00718) In PDB | Human polyomavirus 9 | Major Capsid Protein |
2 | K, L, M, N, O... | N-glycolyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 690.6 | 10 | In PDB GlyTouCan (G08169IN) | |||
3 | C, H, D, I, J... | CALCIUM ION | non-polymer | 40.1 | 10 | Chemie (CA) | |||
4 | B, G, C, H, D... | 1,2-ETHANEDIOL | non-polymer | 62.1 | 29 | Chemie (EDO) | |||
5 | B, G, C, H, I... | ISOPROPYL ALCOHOL | non-polymer | 60.1 | 10 | Chemie (IPA) | |||
6 | water | water | 18.0 | 2395 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H, I, J: 31 - 304 (UniProt: E9NQ90)
PDB | External Database | Details |
---|---|---|
Gly 27 | - | expression tag |
Ser 28 | - | expression tag |
His 29 | - | expression tag |
Met 30 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 301579.8 | |
Branched | Number of molecules | 10 |
Total formula weight | 6906.0 | |
Non-Polymers* | Number of molecules | 49 |
Total formula weight | 2801.7 | |
All* | Total formula weight | 311287.5 |