4PDI
Crystal structure of a complex between an inhibited LlFpg and a N7-Benzyl-Fapy-dG containing DNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Formamidopyrimidine-DNA glycosylase | polymer | 271 | 31116.2 | 1 | UniProt (P42371) Pfam (PF01149) Pfam (PF06831) Pfam (PF06827) | Lactococcus lactis subsp. cremoris | Fapy-DNA glycosylase,DNA-(apurinic or apyrimidinic site) lyase MutM,AP lyase MutM |
| 2 | B (B) | DNA (5'-D(*CP*TP*CP*TP*TP*TP*(SOS)P*TP*TP*TP*CP*TP*CP*G)-3') | polymer | 14 | 4309.9 | 1 | synthetic construct | ||
| 3 | C (C) | DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3') | polymer | 14 | 4355.9 | 1 | synthetic construct | ||
| 4 | D (A) | 2-sulfanyl-1,9-dihydro-6H-purin-6-one | non-polymer | 168.2 | 1 | Chemie (2ON) | |||
| 5 | E, F, G (A, B, C) | water | water | 18.0 | 289 | Chemie (HOH) |
Sequence modifications
A: 1 - 271 (UniProt: P42371)
| PDB | External Database | Details |
|---|---|---|
| - | Asp 139 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 39782.0 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 168.2 | |
| All* | Total formula weight | 39950.2 |
