4P5M
Structural Basis of Chronic Beryllium Disease: Bridging the Gap Between Allergic Hypersensitivity and Autoimmunity
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, E, G | HLA class II histocompatibility antigen, DP alpha 1 chain | polymer | 183 | 21169.6 | 4 | UniProt (P20036) Pfam (PF00993) Pfam (PF07654) In PDB | Homo sapiens (Human) | DP(W3),DP(W4),HLA-SB alpha chain,MHC class II DP3-alpha,MHC class II DPA1 |
2 | B, D, F, H | peptide,HLA class II histocompatibility antigen, DP beta 1 chain | polymer | 212 | 24341.1 | 4 | UniProt (Q5EP54) Pfam (PF00969) Pfam (PF07654) UniProt (by SIFTS) (P04440) In PDB | Homo sapiens (Human) | HLA class II histocompatibility antigen,DP(W2) beta chain,MHC class II antigen DPB1 |
3 | I, K, N | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
4 | J | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 830.8 | 1 | In PDB GlyTouCan (G57331KL) | |||
5 | L | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 627.6 | 1 | In PDB GlyTouCan (G26744ZJ) | |||
6 | M | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-D-mannopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 789.7 | 1 | In PDB GlyTouCan (G59760RN) | |||
7 | O | beta-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G29706YY) | |||
8 | A, C | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
9 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
10 | water | water | 18.0 | 1660 | Chemie (HOH) |
Sequence modifications
B, D, F, H: -25 - -14 (PDB: 4P5M)
B, D, F, H: 3 - 189 (UniProt: Q5EP54)
PDB | External Database | Details |
---|---|---|
Gly -13 | - | linker |
Gly -12 | - | linker |
Ser -11 | - | linker |
Leu -10 | - | linker |
Val -9 | - | linker |
Pro -8 | - | linker |
Arg -7 | - | linker |
Gly -6 | - | linker |
Ser -5 | - | linker |
Gly -4 | - | linker |
Gly -3 | - | linker |
Gly -2 | - | linker |
Gly -1 | - | linker |
PDB | External Database | Details |
---|---|---|
Ser 3 | Thr 32 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 182042.6 | |
Branched | Number of molecules | 7 |
Total formula weight | 4107.9 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 267.2 | |
All* | Total formula weight | 186417.7 |