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4OVL

Interrogating HIV integrase for compounds that bind- a SAMPL challenge

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Integrasepolymer18320044.72UniProt (Q76353)
Pfam (PF00665)
UniProt (by SIFTS) (P12497)
Human immunodeficiency virus 1
2C, D, L, M, N...
(A, B)
SULFATE IONnon-polymer96.16Chemie (SO4)
3E, F, G, H, I...
(A, B)
ACETIC ACIDnon-polymer60.17Chemie (ACY)
4J, S
(A, B)
3-[(E)-(2-oxidanylidene-1H-indol-3-ylidene)methyl]benzoic acidnon-polymer265.32Chemie (1TD)
5K
(A)
GLYCEROLnon-polymer92.11Chemie (GOL)
6P
(B)
1,2-ETHANEDIOLnon-polymer62.11Chemie (EDO)
7T, U
(A, B)
waterwater18.0137Chemie (HOH)
Sequence modifications
A, B: 50 - 212 (UniProt: Q76353)
PDBExternal DatabaseDetails
Met 30-expression tag
Gly 31-expression tag
Ser 32-expression tag
Ser 33-expression tag
His 34-expression tag
His 35-expression tag
His 36-expression tag
His 37-expression tag
His 38-expression tag
His 39-expression tag
Ser 40-expression tag
Ser 41-expression tag
Gly 42-expression tag
Leu 43-expression tag
Val 44-expression tag
Pro 45-expression tag
Arg 46-expression tag
Gly 47-expression tag
Ser 48-expression tag
His 49-expression tag
Ser 56Cys 56engineered mutation
Asp 139Phe 139engineered mutation
His 185Phe 185engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight40089.3
Non-Polymers*Number of molecules17
Total formula weight1681.4
All*Total formula weight41770.8
*Water molecules are not included.

237735

PDB entries from 2025-06-18

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