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4OP4

Crystal structure of the catalytic domain of DapE protein from V.cholerea in the Zn bound form

Replaces:  3T6M
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, BSuccinyl-diaminopimelate desuccinylasepolymer26828676.62UniProt (Q9KQ52)
Pfam (PF01546)
In PDB
Vibrio cholerae O1 biovar El TorSDAP desuccinylase, N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase
2A, B1,2-ETHANEDIOLnon-polymer62.15Chemie (EDO)
3A, BZINC IONnon-polymer65.44Chemie (ZN)
4A, BGLYCEROLnon-polymer92.13Chemie (GOL)
5A, B1,4-BUTANEDIOLnon-polymer90.16Chemie (BU1)
6waterwater18.0513Chemie (HOH)
Sequence modifications
A, B: 2 - 181 (UniProt: Q9KQ52)
PDBExternal DatabaseDetails
Ser -1-expression tag
Asn 0-expression tag
Ala 1-expression tag
A, B: 184 - 266 (UniProt: Q9KQ52)
PDBExternal DatabaseDetails
Gly 182-linker
Gly 183-linker
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight57353.1
Non-Polymers*Number of molecules18
Total formula weight1389.0
All*Total formula weight58742.1
*Water molecules are not included.

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PDB entries from 2024-06-12

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