4OP4
Crystal structure of the catalytic domain of DapE protein from V.cholerea in the Zn bound form
Replaces: 3T6MEntity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Succinyl-diaminopimelate desuccinylase | polymer | 268 | 28676.6 | 2 | UniProt (Q9KQ52) Pfam (PF01546) | Vibrio cholerae O1 biovar El Tor | SDAP desuccinylase, N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase |
| 2 | C, J, M, N, T (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
| 3 | D, E, O, P (A, B) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 4 | F, K, Q (A, B) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
| 5 | G, H, I, L, R... (A, B) | 1,4-BUTANEDIOL | non-polymer | 90.1 | 6 | Chemie (BU1) | |||
| 6 | U, V (A, B) | water | water | 18.0 | 513 | Chemie (HOH) |
Sequence modifications
A, B: 2 - 181 (UniProt: Q9KQ52)
A, B: 184 - 266 (UniProt: Q9KQ52)
| PDB | External Database | Details |
|---|---|---|
| Ser -1 | - | expression tag |
| Asn 0 | - | expression tag |
| Ala 1 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly 182 | - | linker |
| Gly 183 | - | linker |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 57353.1 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 1389.0 | |
| All* | Total formula weight | 58742.1 |
