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4OP4

Crystal structure of the catalytic domain of DapE protein from V.cholerea in the Zn bound form

Replaces:  3T6M
Functional Information from GO Data
ChainGOidnamespacecontents
A0016787molecular_functionhydrolase activity
B0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 301
ChainResidue
AASP255
AGLN258
ALYS259
AASN262

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 302
ChainResidue
AASP101
AGLU136
AHIS239
AZN303
AEDO311

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ZN A 303
ChainResidue
AHIS68
AASP101
AGLU135
AGLU136
AGLU164
AZN302
AEDO311

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 304
ChainResidue
AARG145
AGLU148
ATHR149
AHOH438
AHOH458
BARG179

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BU1 A 305
ChainResidue
ALEU77
ATRP80
AHIS81
BVAL89
BASP91
BGLY92

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BU1 A 306
ChainResidue
AMET151
AGLU155
AILE157
AMET224
AGLY225
AALA226

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE BU1 A 307
ChainResidue
ATHR212
AGLY213
AGLY214
AARG219
AVAL228
AHOH527
AHOH640

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 308
ChainResidue
ATHR188
AGLU190
AGLN227

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 309
ChainResidue
AALA36
ALEU37
AGLY38
AARG56

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE BU1 A 310
ChainResidue
AASP91
AGLY92
AHOH529
BTRP80
BHIS81
BTHR82
BPRO83

site_idBC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 311
ChainResidue
AHIS68
AASP101
AGLU135
AGLU136
AGLU164
AHIS239
AZN302
AZN303
AHOH454

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 301
ChainResidue
BGLN258
BLYS259
BASN262
BHOH518

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 302
ChainResidue
BASP101
BGLU136
BHIS239
BZN303
BHOH634
BHOH635

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 303
ChainResidue
BHIS68
BASP101
BGLU136
BGLU164
BZN302
BHOH634

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 304
ChainResidue
AARG179
BARG145
BGLU148
BTHR149
BHOH418
BHOH445

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BU1 B 305
ChainResidue
BGLU155
BLEU156
BILE157
BMET224
BGLY225
BALA226

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BU1 B 306
ChainResidue
BGLU230
BHOH585
BLYS176
BASN177
BGLY178
BTHR212
BGLY213
BGLY214
BGLY218

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 307
ChainResidue
BPRO61
BTHR188
BGLU190
BGLN227

Functional Information from PROSITE/UniProt
site_idPS00759
Number of Residues39
DetailsARGE_DAPE_CPG2_2 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. AADmKGslAcmIvaverfiaehpdhqgs.IgFLItsDEE.G
ChainResidueDetails
AALA99-GLY137

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000250
ChainResidueDetails
AASP70
BASP70

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000250
ChainResidueDetails
AGLU135
BGLU135

site_idSWS_FT_FI3
Number of Residues10
DetailsBINDING: BINDING => ECO:0007744|PDB:4OP4
ChainResidueDetails
AGLU136
AGLU164
AHIS239
BHIS68
BASP101
BGLU136
BGLU164
BHIS239
AHIS68
AASP101

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PDB entries from 2024-06-12

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