4MNG
Structure of the DP10.7 TCR with CD1d-sulfatide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | B, D | Beta-2-microglobulin | polymer | 99 | 11660.4 | 2 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
2 | A, C | Cd1d1 protein | polymer | 281 | 31972.8 | 2 | UniProt (P15813) UniProt (Q7TMK5) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609) In PDB | Mus musculus | |
3 | E, F | TRA@ protein,TRA@ protein, Ti antigen CD3-associated protein gamma chain V-J-C region | polymer | 262 | 28534.9 | 2 | UniProt (Q6PJ56) Pfam (PF07686) In PDB | Homo sapiens (Human) | |
4 | A, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 6 | Chemie (NAG) | |||
5 | A, C | (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE | non-polymer | 890.3 | 2 | Chemie (CIS) | |||
6 | water | water | 18.0 | 18 | Chemie (HOH) |
Sequence modifications
A, C: 3 - 183 (UniProt: P15813)
A, C: 184 - 277 (UniProt: Q7TMK5)
E, F: 1 - 119 (UniProt: Q6PJ56)
E, F: 120 - 262 (PDB: 4MNG)
PDB | External Database | Details |
---|---|---|
Ala 0 | - | expression tag |
Asp 1 | - | expression tag |
Pro 2 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ser 278 | - | expression tag |
Gly 279 | - | expression tag |
Arg 280 | - | expression tag |
PDB | External Database | Details |
---|---|---|
- | Ser 116 | deletion |
- | Phe 117 | deletion |
- | Leu 118 | deletion |
Ser 97 | Phe 120 | conflict |
Tyr 98 | Arg 121 | conflict |
Trp 99 | Gly 122 | conflict |
Gly 100 | Asn 123 | conflict |
Pro 102 | His 125 | conflict |
Arg 103 | Tyr 126 | conflict |
Thr 105 | Asp 128 | conflict |
Arg 106 | Lys 129 | conflict |
Val 107 | Leu 130 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 144336.1 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 3107.9 | |
All* | Total formula weight | 147444.0 |