4MCW
Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Metal dependent phosphohydrolase | polymer | 369 | 42765.8 | 2 | UniProt (C0QQ26) Pfam (PF01590) Pfam (PF13487) In PDB | Persephonella marina | |
2 | A, B | FE (III) ION | non-polymer | 55.8 | 6 | Chemie (FE) | |||
3 | A, B | SUCCINIC ACID | non-polymer | 118.1 | 6 | Chemie (SIN) | |||
4 | A | IMIDAZOLE | non-polymer | 69.1 | 1 | Chemie (IMD) | |||
5 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
6 | water | water | 18.0 | 404 | Chemie (HOH) |
Sequence modifications
A, B: 2 - 363 (UniProt: C0QQ26)
PDB | External Database | Details |
---|---|---|
Gly -5 | - | expression tag |
Pro -4 | - | expression tag |
Gly -3 | - | expression tag |
Tyr -2 | - | expression tag |
Gln -1 | - | expression tag |
Asp 0 | - | expression tag |
Pro 1 | - | expression tag |
Ala 41 | Cys 41 | engineered mutation |
Ala 197 | Cys 197 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 85531.6 | |
Non-Polymers* | Number of molecules | 14 |
Total formula weight | 1174.8 | |
All* | Total formula weight | 86706.3 |