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4MCW

Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0016787molecular_functionhydrolase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE A 401
ChainResidue
AASP222
AHIS250
AHIS276
AHIS277
AFE402
ASIN404
AHOH575

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FE A 402
ChainResidue
ALYS225
AFE401
AFE403
ASIN404
ASIN405
AHOH575
AHOH576
AGLU185
AASP222

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE A 403
ChainResidue
AGLU185
AHIS189
AASP305
AFE402
ASIN405
AIMD407
AHOH576

site_idAC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE SIN A 404
ChainResidue
AGLU185
AASP222
ALYS225
ALYS238
ATRP244
AMET247
AHIS250
AHIS277
ATYR285
AFE401
AFE402
ASIN405
AHOH575
AHOH592
AHOH636

site_idAC5
Number of Residues17
DetailsBINDING SITE FOR RESIDUE SIN A 405
ChainResidue
AGLU185
AHIS189
AGLY237
ALYS238
AASP305
AALA309
AFE402
AFE403
ASIN404
AHOH535
AHOH575
AHOH576
AHOH585
AHOH587
AHOH592
AHOH709
AHOH714

site_idAC6
Number of Residues12
DetailsBINDING SITE FOR RESIDUE SIN A 406
ChainResidue
ASER176
ATHR179
AASP183
AGLU185
AILE190
APRO219
AMET220
AHIS221
AASP222
AILE223
ALYS225
AIMD407

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE IMD A 407
ChainResidue
AGLU185
AHIS189
APRO219
AHIS221
AASP222
AASP305
AFE403
ASIN406
AHOH576

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 408
ChainResidue
ATYR89
AARG96
AASP99
ALYS100
BTYR11
BLYS14
BPHE27
BASP30

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE B 401
ChainResidue
BASP222
BHIS250
BHIS276
BHIS277
BSIN404
BHOH628

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE B 402
ChainResidue
BGLU185
BASP222
BFE403
BSIN404
BSIN405
BHOH542
BHOH628

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FE B 403
ChainResidue
BHIS221
BASP305
BFE402
BSIN405
BHOH542
BHOH545
BGLU185
BHIS189

site_idBC3
Number of Residues14
DetailsBINDING SITE FOR RESIDUE SIN B 404
ChainResidue
BGLU185
BASP222
BLYS225
BMET247
BHIS250
BHIS277
BTYR285
BFE401
BFE402
BSIN405
BHOH547
BHOH628
BHOH633
BHOH654

site_idBC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SIN B 405
ChainResidue
BGLU185
BASP305
BVAL306
BALA309
BFE402
BFE403
BSIN404
BHOH542
BHOH544
BHOH628

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SIN B 406
ChainResidue
AASP350
BTRP320
BARG324
BARG327
BPHE328
BGLU331
BHOH562

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PDB entries from 2024-04-24

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