4MBZ
Structure of B-Lymphotropic Polyomavirus VP1 in complex with 3'-sialyllactosamine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Major Capsid Protein VP1 | polymer | 278 | 30125.1 | 10 | Pfam (PF00718) UniProt (by SIFTS) (P04010) | B-lymphotropic polyomavirus | |
| 2 | K, L, M, N, O... (K, L, M, N, O...) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose | branched | 471.4 | 6 | In PDB GlyTouCan (G30207PZ) | |||
| 3 | Q (Q) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 674.6 | 1 | In PDB BIRD (PRD_900067) GlyTouCan (G00065MO) | 3'-sialyl-N-acetyllactosamine | ||
| 4 | DB, EA, HB, JA, MB... (H, C, I, D, J...) | CALCIUM ION | non-polymer | 40.1 | 10 | Chemie (CA) | |||
| 5 | EB, FA, IB, KA, NB... (H, C, I, D, J...) | CHLORIDE ION | non-polymer | 35.5 | 10 | Chemie (CL) | |||
| 6 | AA, AB, BA, BB, CA... (B, G, H, C, I...) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 23 | Chemie (EDO) | |||
| 7 | CB, DA, GB, IA, LB... (G, B, H, C, I...) | ISOPROPYL ALCOHOL | non-polymer | 60.1 | 10 | Chemie (IPA) | |||
| 8 | AC, BC, SB, TB, UB... (I, J, A, B, C...) | water | water | 18.0 | 2900 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 301250.6 | |
| Branched | Number of molecules | 7 |
| Total formula weight | 3503.1 | |
| Non-Polymers* | Number of molecules | 53 |
| Total formula weight | 2783.8 | |
| All* | Total formula weight | 307537.5 |
