4LYK
Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in complex with activating cofactor Mg++
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | Cyclic di-GMP phosphodiesterase YahA | polymer | 279 | 31080.7 | 4 | UniProt (P21514) Pfam (PF00563) In PDB | Escherichia coli | |
2 | A, B, C, D | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
3 | A, B, C, D | trans-4-(hydroxymethyl)cyclohexanol | non-polymer | 130.2 | 4 | Chemie (HB0) | |||
4 | A, B, C, D | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
5 | water | water | 18.0 | 233 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 101 - 362 (UniProt: P21514)
PDB | External Database | Details |
---|---|---|
Met 84 | - | expression tag |
His 85 | - | expression tag |
His 86 | - | expression tag |
His 87 | - | expression tag |
His 88 | - | expression tag |
His 89 | - | expression tag |
His 90 | - | expression tag |
Ser 91 | - | expression tag |
Ser 92 | - | expression tag |
Gly 93 | - | expression tag |
Leu 94 | - | expression tag |
Val 95 | - | expression tag |
Pro 96 | - | expression tag |
Arg 97 | - | expression tag |
Gly 98 | - | expression tag |
Ser 99 | - | expression tag |
His 100 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 124322.7 | |
Non-Polymers* | Number of molecules | 13 |
Total formula weight | 928.3 | |
All* | Total formula weight | 125251.0 |