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4LYK

Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in complex with activating cofactor Mg++

Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 401
ChainResidue
AGLU141
AASN200
AGLU232
AASP262
AHOH505
AHOH515

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE HB0 A 402
ChainResidue
AHIS196
AVAL230
AGLU232
APHE337
AVAL129
ATHR138
AGLY139

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 403
ChainResidue
AGLY265
AALA269
ATHR270
ATYR271
BGLY265
BALA269
BTHR270
BTYR271

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 404
ChainResidue
ATHR234
APRO238
AILE239
ALEU261
ATYR273

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 401
ChainResidue
BGLU141
BASN200
BGLU232
BASP262
BHOH503
BHOH532

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE HB0 B 402
ChainResidue
BVAL129
BTHR138
BGLY139
BHIS196
BVAL230
BGLU232
BPHE337

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 403
ChainResidue
BLEU233
BTHR234
BPRO238
BILE239
BLEU261
BTYR268
BALA269
BTYR273

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 401
ChainResidue
CGLU141
CASN200
CGLU232
CASP262
CHOH504
CHOH506

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE HB0 C 402
ChainResidue
CVAL129
CTHR138
CGLY139
CHIS196
CVAL230
CGLU232
CPHE281
CVAL317
CPHE337

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO C 403
ChainResidue
CGLY265
CALA269
CTHR270
CTYR271
DGLY265
DALA269
DTHR270
DTYR271

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 401
ChainResidue
DGLU141
DASN200
DGLU232
DASP262
DHOH503
DHOH504

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE HB0 D 402
ChainResidue
DVAL129
DTHR138
DGLY139
DHIS196
DVAL230
DGLU232
DLYS283
DVAL317
DPHE337

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D 403
ChainResidue
DLEU233
DTHR234
DILE239
DTYR273
DHOH506
DHOH507

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues28
DetailsBINDING: BINDING => ECO:0000269|PubMed:24451384, ECO:0007744|PDB:4LJ3
ChainResidueDetails
CASN200
CASP262
CLYS286
CGLU319
CTYR341
DGLN127
DVAL144
DASN200
DASP262
DLYS286
DGLU319
DTYR341
AGLN127
AVAL144
AASN200
AASP262
ALYS286
AGLU319
ATYR341
BGLN127
BVAL144
BASN200
BASP262
BLYS286
BGLU319
BTYR341
CGLN127
CVAL144

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:24451384, ECO:0007744|PDB:4LYK
ChainResidueDetails
AGLU141
AGLU232
BGLU141
BGLU232
CGLU141
CGLU232
DGLU141
DGLU232

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PDB entries from 2024-05-29

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