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4LYK

Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in complex with activating cofactor Mg++

Functional Information from GO Data
ChainGOidnamespacecontents
A0071111molecular_functioncyclic-guanylate-specific phosphodiesterase activity
B0071111molecular_functioncyclic-guanylate-specific phosphodiesterase activity
C0071111molecular_functioncyclic-guanylate-specific phosphodiesterase activity
D0071111molecular_functioncyclic-guanylate-specific phosphodiesterase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 401
ChainResidue
AGLU141
AASN200
AGLU232
AASP262
AHOH505
AHOH515

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE HB0 A 402
ChainResidue
AHIS196
AVAL230
AGLU232
APHE337
AVAL129
ATHR138
AGLY139

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 403
ChainResidue
AGLY265
AALA269
ATHR270
ATYR271
BGLY265
BALA269
BTHR270
BTYR271

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 404
ChainResidue
ATHR234
APRO238
AILE239
ALEU261
ATYR273

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 401
ChainResidue
BGLU141
BASN200
BGLU232
BASP262
BHOH503
BHOH532

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE HB0 B 402
ChainResidue
BVAL129
BTHR138
BGLY139
BHIS196
BVAL230
BGLU232
BPHE337

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 403
ChainResidue
BLEU233
BTHR234
BPRO238
BILE239
BLEU261
BTYR268
BALA269
BTYR273

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 401
ChainResidue
CGLU141
CASN200
CGLU232
CASP262
CHOH504
CHOH506

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE HB0 C 402
ChainResidue
CVAL129
CTHR138
CGLY139
CHIS196
CVAL230
CGLU232
CPHE281
CVAL317
CPHE337

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO C 403
ChainResidue
CGLY265
CALA269
CTHR270
CTYR271
DGLY265
DALA269
DTHR270
DTYR271

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 401
ChainResidue
DGLU141
DASN200
DGLU232
DASP262
DHOH503
DHOH504

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE HB0 D 402
ChainResidue
DVAL129
DTHR138
DGLY139
DHIS196
DVAL230
DGLU232
DLYS283
DVAL317
DPHE337

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D 403
ChainResidue
DLEU233
DTHR234
DILE239
DTYR273
DHOH506
DHOH507

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues36
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"24451384","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4LJ3","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"24451384","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4LYK","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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