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4LPS

Crystal structure of HypB from Helicobacter pylori in complex with nickel

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Hydrogenase/urease nickel incorporation protein HypBpolymer24227346.42UniProt (O25560)
Pfam (PF02492)
Helicobacter pylori
2C, M
(A, B)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
3D, N
(A, B)
GUANOSINE-5'-DIPHOSPHATEnon-polymer443.22Chemie (GDP)
4E, I, O, R, S
(A, B)
PHOSPHATE IONnon-polymer95.05Chemie (PO4)
5F
(A)
NICKEL (II) IONnon-polymer58.71Chemie (NI)
6G, H, L, P, Q...
(A, B)
GLYCEROLnon-polymer92.17Chemie (GOL)
7J, K, T
(A, B)
MALONATE IONnon-polymer102.03Chemie (MLI)
8W, X
(A, B)
waterwater18.0335Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight54692.9
Non-Polymers*Number of molecules20
Total formula weight2419.4
All*Total formula weight57112.2
*Water molecules are not included.

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PDB entries from 2025-06-18

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