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4LPS

Crystal structure of HypB from Helicobacter pylori in complex with nickel

Functional Information from GO Data
ChainGOidnamespacecontents
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
A0008270molecular_functionzinc ion binding
A0016151molecular_functionnickel cation binding
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
A0051604biological_processprotein maturation
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
B0008270molecular_functionzinc ion binding
B0016151molecular_functionnickel cation binding
B0016787molecular_functionhydrolase activity
B0046872molecular_functionmetal ion binding
B0051604biological_processprotein maturation
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 301
ChainResidue
ATHR60
AASP86
AGLU135
AGDP302
APO4303
AHOH535
BLYS168

site_idAC2
Number of Residues28
DetailsBINDING SITE FOR RESIDUE GDP A 302
ChainResidue
AGLY58
ALYS59
ATHR60
ATHR61
AARG89
AGLU135
ALYS183
AASP185
AMET186
ASER214
ASER215
AMG301
APO4303
AHOH426
AHOH427
AHOH494
AHOH495
AHOH508
AHOH535
BPRO160
BGLU161
BLYS165
BPHE190
BHOH420
BHOH458
BHOH510
AGLY56
ASER57

site_idAC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE PO4 A 303
ChainResidue
APRO55
AGLY56
ALYS59
AASP80
AASP86
AGLU135
AGLY138
AMG301
AGDP302
AHOH535
BLYS165
BLYS168
BTYR169
BHOH483
BHOH556

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NI A 304
ChainResidue
ACYS106
AASN139
ACYS142
BCYS106
BCYS142

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 305
ChainResidue
APHE74
ASER96
ALYS128
AGOL306

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 306
ChainResidue
AALA67
APHE69
ALYS70
APHE72
ALYS73
APHE74
AGOL305

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A 307
ChainResidue
AARG40
ALYS43
AGLU44
APHE117
ALYS121

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MLI A 308
ChainResidue
AARG85
AHOH526
AHOH533
BLYS128
BLEU167
BLYS203

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MLI A 309
ChainResidue
AMET174
ALYS205
ATHR239
AHIS240
AHOH447
AHOH453
AHOH498

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 310
ChainResidue
ALYS33
AGLU36
BLYS198

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 301
ChainResidue
BTHR60
BASP86
BGLU135
BGDP302
BPO4303
BHOH407

site_idBC3
Number of Residues25
DetailsBINDING SITE FOR RESIDUE GDP B 302
ChainResidue
BSER57
BGLY58
BLYS59
BTHR60
BTHR61
BGLU135
BLYS183
BASP185
BMET186
BSER214
BSER215
BMG301
BPO4303
BHOH405
BHOH407
BHOH415
BHOH451
BHOH474
BHOH477
APRO160
AGLU161
ALYS165
APHE190
AHOH412
BGLY56

site_idBC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PO4 B 303
ChainResidue
ALYS165
ALYS168
ATYR169
AHOH505
BPRO55
BLYS59
BASP80
BASP86
BGLY138
BMG301
BGDP302
BHOH516

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 304
ChainResidue
BPHE74
BCYS75
BGLY94
BSER96
BLYS128
BSER129
BGOL309

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 305
ChainResidue
AASP88
AARG91
BARG91
BGLY94
BSER96
BHOH448

site_idBC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 B 306
ChainResidue
AGLU123
AHOH500
AHOH557
BASN84
BALA87
BARG91
BHIS98
BGLN99

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 B 307
ChainResidue
BARG40
BLYS43
BGLU44
BPHE117
BLYS121
BHOH537

site_idBC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MLI B 308
ChainResidue
BMET174
BLYS205
BSER238
BTHR239
BHIS240
BHOH404
BHOH461
BHOH473
BHOH542

site_idCC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 309
ChainResidue
BALA67
BPHE69
BLYS70
BPHE72
BLYS73
BPHE74
BGLY94
BGOL304
BHOH567

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 310
ChainResidue
AVAL187
APHE192
AARG193
BLEU42
BHOH457
BHOH566

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000305|PubMed:21239585
ChainResidueDetails
ACYS106
ACYS142
BCYS106
BCYS142

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:21239585, ECO:0000305|PubMed:24338018
ChainResidueDetails
AHIS107
BHIS107

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PDB entries from 2024-07-24

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