4LDT
The structure of h/ceOTUB1-ubiquitin aldehyde-UBCH5B~Ub
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Ubiquitin thioesterase otubain-like | polymer | 288 | 32795.6 | 1 | UniProt (Q96FW1) UniProt (Q9XVR6) Pfam (PF10275) In PDB | Homo sapiens (human nematode) | Deubiquitinating enzyme OTUB1, OTU domain-containing ubiquitin aldehyde-binding protein 1, Otubain-1, hOTU1, Ubiquitin-specific-processing protease OTUB1, Deubiquitinating enzyme otubain-like, Ubiquitin-specific-processing protease otubain-like |
| 2 | B | Ubiquitin aldehyde | polymer | 76 | 8560.8 | 1 | UniProt (P0CG48) Pfam (PF00240) In PDB | Homo sapiens (human) | |
| 3 | C | Ubiquitin-conjugating enzyme E2 D2 | polymer | 148 | 16796.2 | 1 | UniProt (P62837) Pfam (PF00179) In PDB | Homo sapiens (human) | Ubiquitin carrier protein D2, Ubiquitin-conjugating enzyme E2(17)KB 2, Ubiquitin-conjugating enzyme E2-17 kDa 2, Ubiquitin-protein ligase D2, p53-regulated ubiquitin-conjugating enzyme 1 |
| 4 | D | Ubiquitin | polymer | 76 | 8576.8 | 1 | UniProt (P0CG48) Pfam (PF00240) In PDB | Homo sapiens (human) | |
| 5 | A, C | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
| 6 | B | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 7 | water | water | 18.0 | 316 | Chemie (HOH) |
Sequence modifications
A: -3 - 41 (UniProt: Q96FW1)
A: 42 - 284 (UniProt: Q9XVR6)
C: 1 - 147 (UniProt: P62837)
A: 42 - 284 (UniProt: Q9XVR6)
C: 1 - 147 (UniProt: P62837)
| PDB | External Database | Details |
|---|---|---|
| Gly 0 | - | expression tag |
| Ser 85 | Cys 85 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 66729.5 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 272.6 | |
| All* | Total formula weight | 67002.1 |
