4LDT
The structure of h/ceOTUB1-ubiquitin aldehyde-UBCH5B~Ub
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 77 |
Detector technology | CCD |
Collection date | 2012-03-11 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 104.894, 131.612, 46.501 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.650 - 1.901 |
R-factor | 0.19342 |
Rwork | 0.192 |
R-free | 0.22318 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4dhz |
RMSD bond length | 0.009 |
RMSD bond angle | 1.248 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | REFMAC (5.7.0029) |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.650 | 1.930 |
High resolution limit [Å] | 1.901 | 1.901 |
Number of reflections | 51582 | |
<I/σ(I)> | 8.5 | 1.7 |
Completeness [%] | 99.0 | 95.4 |
Redundancy | 8 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293.15 | 1:1 mix of 12 mg/mL purified complex and well solution (100 mM Bis-Tris, pH 6.0, 200 mM magnesium chloride, 22% PEG3350), crystals appeared in about 2 to 3 days, cryoprotection with well solution + 10% ethylene glycol, flash frozen in liquid nitrogen, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K |