4L71
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, AB (QA, XA) | 16S Ribosomal RNA | polymer | 1522 | 493958.3 | 2 | GenBank (55771382) | Thermus thermophilus HB8 | |
| 2 | B, BB (QB, XB) | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 2 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 3 | C, CB (QC, XC) | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 2 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 4 | D, DB (QD, XD) | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 2 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 5 | E, EB (QE, XE) | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 2 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 6 | F, FB (QF, XF) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (P62666) Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 7 | G, GB (QG, XG) | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 2 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 8 | H, HB (QH, XH) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (P0DOY9) Pfam (PF00410) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 9 | I, IB (QI, XI) | 30S ribosomal protein S9 | polymer | 128 | 14410.6 | 2 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 10 | J, JB (QJ, XJ) | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 2 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 11 | K, KB (QK, XK) | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 2 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 12 | L, LB (QL, XL) | 30S ribosomal protein S12 | polymer | 132 | 14637.4 | 2 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 13 | M, MB (QM, XM) | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 2 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 14 | N, NB (QN, XN) | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 2 | UniProt (P0DOY6) Pfam (PF00253) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 15 | O, OB (QO, XO) | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 2 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 16 | P, PB (QP, XP) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 2 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 17 | Q, QB (QQ, XQ) | 30S ribosomal protein S17 | polymer | 105 | 12325.7 | 2 | UniProt (P0DOY7) Pfam (PF00366) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 18 | R, RB (QR, XR) | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 2 | UniProt (P62659) Pfam (PF01084) | Thermus thermophilus | |
| 19 | S, SB (QS, XS) | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 2 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 20 | T, TB (QT, XT) | 30S ribosomal protein S20 | polymer | 106 | 11736.1 | 2 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 21 | U, UB (QU, XU) | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 2 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | S31 |
| 22 | V, VB (RA, YA) | 23S Ribosomal RNA | polymer | 2916 | 948240.6 | 2 | GenBank (55771382) | Thermus thermophilus HB8 | |
| 23 | W, WB (RB, YB) | 5S Ribosomal RNA | polymer | 122 | 39494.5 | 2 | GenBank (55771382) | Thermus thermophilus HB8 | |
| 24 | X, XB (RD, YD) | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 2 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 25 | Y, YB (RE, YE) | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q5SHN8) Pfam (PF00297) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 26 | Z, ZB (RF, YF) | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 2 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | L1e |
| 27 | AA, AC (RG, YG) | 50S ribosomal protein L5 | polymer | 182 | 21061.6 | 2 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 28 | BA, BC (RH, YH) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (P0DOY8) Pfam (PF00347) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 29 | CA, CC (RI, YI) | 50S ribosomal protein L9 | polymer | 148 | 16422.2 | 2 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus | |
| 30 | DA, DC (RN, YN) | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 2 | UniProt (P60488) Pfam (PF00572) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 31 | EA, EC (RO, YO) | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 2 | UniProt (Q5SHP8) Pfam (PF00238) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 32 | FA, FC (RP, YP) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q5SHQ7) Pfam (PF00828) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 33 | GA, GC (RQ, YQ) | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 2 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 34 | HA, HC (RR, YR) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 35 | IA, IC (RS, YS) | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 2 | UniProt (Q5SHQ4) Pfam (PF00861) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TL24 |
| 36 | JA, JC (RT, YT) | 50S ribosomal protein L19 | polymer | 146 | 17188.8 | 2 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 37 | KA, KC (RU, YU) | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 2 | UniProt (P60491) Pfam (PF00453) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 38 | LA, LC (RV, YV) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (P60492) Pfam (PF00829) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 39 | MA, MC (RW, YW) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q5SHP3) Pfam (PF00237) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 40 | NA, NC (RX, YX) | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q5SHP0) Pfam (PF00276) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 41 | OA, OC (RY, YY) | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus | |
| 42 | PA, PC (RZ, YZ) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TL5 |
| 43 | QA, QC (R0, Y0) | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 2 | UniProt (P60493) Pfam (PF01016) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 44 | RA, RC (R1, Y1) | 50S ribosomal protein L28 | polymer | 98 | 11004.2 | 2 | UniProt (P60494) Pfam (PF00830) | Thermus thermophilus | |
| 45 | SA, SC (R2, Y2) | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q5SHP6) Pfam (PF00831) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 46 | TA, TC (R3, Y3) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q5SHQ6) Pfam (PF00327) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 47 | UA, UC (R4, Y4) | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q5SJE1) Pfam (PF01197) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 48 | VA, VC (R5, Y5) | 50S ribosomal protein L32 | polymer | 60 | 6722.1 | 2 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 49 | WA, WC (R6, Y6) | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (P35871) Pfam (PF00471) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 50 | XA, XC (R7, Y7) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 51 | YA, YC (R8, Y8) | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 2 | UniProt (Q5SKU1) Pfam (PF01632) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 52 | ZA, ZC (R9, Y9) | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 2 | UniProt (Q5SHR2) Pfam (PF00444) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | Ribosomal protein B |
| 53 | AD, DD (QV, XV) | P-site tRNA fMet | polymer | 77 | 24802.8 | 2 | GenBank (1163074592) | Escherichia coli | |
| 54 | BD, ED (QX, XX) | A-site ASL SufA6 | polymer | 25 | 8155.0 | 2 | Synthetic | ||
| 55 | CD, FD (QY, XY) | messenger RNA | polymer | 18 | 5818.5 | 2 | Synthetic | ||
| 56 | GD, HD (Z6, Z8) | tRNA acceptor end mimic | polymer | 3 | 1098.9 | 2 | Synthetic | ||
| 57 | AAA, ABA, ACA, ADA, AE... (YA, QA, RA, XA, YB...) | MAGNESIUM ION | non-polymer | 24.3 | 676 | Chemie (MG) | |||
| 58 | SS, VF (XA, QA) | PAROMOMYCIN | non-polymer | 615.6 | 2 | Chemie (PAR) | |||
| 59 | AG, LDA, TS, VS, WF... (QN, Y9, XD, XN, QD...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 112 |
| Total formula weight | 4417856.7 | |
| Non-Polymers* | Number of molecules | 684 |
| Total formula weight | 18053.9 | |
| All* | Total formula weight | 4435910.6 |
