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4L6A

Structure of human mitochondrial 5'(3')-deoxyribonucleotidase

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
5'(3')-deoxyribonucleotidase, mitochondrialpolymer20223271.51UniProt (Q9NPB1)
Pfam (PF06941)
Homo sapiens (human)5',3'-nucleotidase, mitochondrial, Deoxy-5'-nucleotidase 2, dNT-2
2B
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
3C
(A)
PHOSPHATE IONnon-polymer95.01Chemie (PO4)
4D, E, F, G, H...
(A)
GLYCEROLnon-polymer92.19Chemie (GOL)
5M, N, O, P
(A)
DI(HYDROXYETHYL)ETHERnon-polymer106.14Chemie (PEG)
6Q
(A)
POTASSIUM IONnon-polymer39.11Chemie (K)
7R
(A)
waterwater18.0312Chemie (HOH)
Sequence modifications
A: 32 - 228 (UniProt: Q9NPB1)
PDBExternal DatabaseDetails
Ser 27-expression tag
Asn 28-expression tag
Ala 29-expression tag
Ala 30-expression tag
Ser 31-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight23271.5
Non-Polymers*Number of molecules16
Total formula weight1411.7
All*Total formula weight24683.2
*Water molecules are not included.

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PDB entries from 2025-06-11

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