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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4L47

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1QA, XA16S rRNApolymer1522493958.32GenBank (AP008226.1)Thermus thermophilus
2QB, XB30S ribosomal protein S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
3QC, XC30S ribosomal protein S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
4QD, XD30S ribosomal protein S4polymer20924373.42UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
5QE, XE30S ribosomal protein S5polymer16217583.42UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
6QF, XF30S ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus
7QG, XG30S ribosomal protein S7polymer15618051.02UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
8QH, XH30S ribosomal protein S8polymer13815868.62UniProt (Q5SHQ2)
In PDB		Thermus thermophilus
9QI, XI30S ribosomal protein S9polymer12814410.62UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
10QJ, XJ30S ribosomal protein S10polymer10511955.02UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
11QK, XK30S ribosomal protein S11polymer12913737.92UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
12QL, XL30S ribosomal protein S12polymer13214637.42UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
13QM, XM30S ribosomal protein S13polymer12614338.92UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
14QN, XN30S ribosomal protein S14polymer617158.72UniProt (Q5SHQ1)
In PDB		Thermus thermophilus
15QO, XO30S ribosomal protein S15polymer8910578.42UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
16QP, XP30S ribosomal protein S16polymer8810410.02UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
17QQ, XQ30S ribosomal protein S17polymer10512325.72UniProt (Q5SHP7)
In PDB		Thermus thermophilus
18QR, XR30S ribosomal protein S18polymer8810258.32UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
19QS, XS30S ribosomal protein S19polymer9310605.52UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
20QT, XT30S ribosomal protein S20polymer10611736.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
21QU, XU30S ribosomal protein S21polymer273350.02UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus
22QV, XVP-site tRNA fMetpolymer7724802.82GenBank (AP012306.1)Escherichia coli
23QX, XXA-site ASL SufA6polymer258132.02Synthetic
24QY, XYmessenger RNApolymer185818.52Synthetic
25RA, YA23S rRNApolymer2916948240.62GenBank (AP008226.1)Thermus thermophilus
26RB, YB5S rRNApolymer12239494.52GenBank (AP008226.1)Thermus thermophilus
27RD, YD50S ribosomal protein L2polymer27630532.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
28RE, YE50S ribosomal protein L3polymer20622450.22UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
29RF, YF50S ribosomal protein L4polymer21023271.92UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus
30RG, YG50S ribosomal protein L5polymer18221061.62UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
31RH, YH50S ribosomal protein L6polymer18019568.92UniProt (Q5SHQ3)
In PDB		Thermus thermophilus
32RI, YI50S ribosomal protein L9polymer14816422.22UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
33RN, YN50S ribosomal protein L13polymer14015927.92UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
34RO, YO50S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
35RP, YP50S ribosomal protein L15polymer15016319.12UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
36RQ, YQ50S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
37RR, YR50S ribosomal protein L17polymer11813750.12UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
38RS, YS50S ribosomal protein L18polymer11212639.82UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilus
39RT, YT50S ribosomal protein L19polymer14617188.82UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
40RU, YU50S ribosomal protein L20polymer11813779.32UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
41RV, YV50S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
42RW, YW50S ribosomal protein L22polymer11312808.12UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
43RX, YX50S ribosomal protein L23polymer9610759.82UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus
44RY, YY50S ribosomal protein L24polymer11012085.62UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
45RZ, YZ50S ribosomal protein L25polymer20623238.62UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus
46R0, Y050S ribosomal protein L27polymer859529.12UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
47R1, Y150S ribosomal protein L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
48R2, Y250S ribosomal protein L29polymer728670.32UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
49R3, Y350S ribosomal protein L30polymer606799.12UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
50R4, Y450S ribosomal protein L31polymer718300.52UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
51R5, Y550S ribosomal protein L32polymer606722.12UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
52R6, Y650S ribosomal protein L33polymer546632.92UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
53R7, Y750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
54R8, Y850S ribosomal protein L35polymer657506.22UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus
55R9, Y950S ribosomal protein L36polymer374435.42UniProt (P80256)
Pfam (PF00444)
UniProt (by SIFTS) (Q5SHR2)
In PDB		Thermus thermophilus
56Z6, Z8tRNA acceptor end mimicpolymer31098.92Synthetic
57YA, QA, QM, RA, XA...MAGNESIUM IONnon-polymer24.3679Chemie (MG)
58XA, QAPAROMOMYCINnon-polymer615.62Chemie (PAR)
59QN, Y9, XD, XN, QD...ZINC IONnon-polymer65.46Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains112
Total formula weight4417810.6
Non-Polymers*Number of molecules687
Total formula weight18126.8
All*Total formula weight4435937.5
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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