4KHP
Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S Ribosomal RNA | polymer | 1506 | 488986.5 | 1 | GenBank (55771382) | Thermus thermophilus | |
| 2 | B (B) | 30S Ribosomal protein S2 | polymer | 234 | 26987.3 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
| 3 | C (C) | 30S Ribosomal protein S3 | polymer | 206 | 22862.4 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus | |
| 4 | D (D) | 30S Ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 5 | E (E) | 30S Ribosomal protein S5 | polymer | 150 | 16331.1 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus | |
| 6 | F (F) | 30S Ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus | |
| 7 | G (G) | 30S Ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 8 | H (H) | 30S Ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) | Thermus thermophilus | |
| 9 | I (I) | 30S Ribosomal protein S9 | polymer | 127 | 14298.5 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus | |
| 10 | J (J) | 30S Ribosomal protein S10 | polymer | 98 | 11299.2 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus | |
| 11 | K (K) | 30S Ribosomal protein S11 | polymer | 119 | 12606.4 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
| 12 | L (L) | 30S Ribosomal protein S12 | polymer | 125 | 13875.4 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus | |
| 13 | M (M) | 30S Ribosomal protein S13 | polymer | 120 | 13623.9 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
| 14 | N (N) | 30S Ribosomal protein S14 | polymer | 60 | 7027.5 | 1 | UniProt (Q5SHQ1) | Thermus thermophilus | |
| 15 | O (O) | 30S Ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus | |
| 16 | P (P) | 30S Ribosomal protein S16 | polymer | 83 | 9924.5 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus | |
| 17 | Q (Q) | 30S Ribosomal protein S17 | polymer | 99 | 11722.9 | 1 | UniProt (Q5SHP7) | Thermus thermophilus | |
| 18 | R (R) | 30S Ribosomal protein S18 | polymer | 70 | 8155.8 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus | |
| 19 | S (S) | 30S Ribosomal protein S19 | polymer | 78 | 8949.4 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus | |
| 20 | T (T) | 30S Ribosomal protein S20 | polymer | 99 | 10921.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus | |
| 21 | U (U) | 30S Ribosomal protein THX | polymer | 24 | 2960.5 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus | |
| 22 | V (X) | Fragment of messenger RNA | polymer | 6 | 1790.1 | 1 | Thermus thermophilus | ||
| 23 | AA, BA, CA, W, X... (A) | PAROMOMYCIN | non-polymer | 615.6 | 7 | Chemie (PAR) | |||
| 24 | DA (A) | Pactamycin | non-polymer | 558.6 | 1 | Chemie (PCY) | |||
| 25 | AB, AC, AD, AE, BB... (A, E, K, S, D) | MAGNESIUM ION | non-polymer | 24.3 | 103 | Chemie (MG) |
Sequence modifications
A: 6 - 1511 (GenBank: 55771382)
I: 2 - 128 (UniProt: P80374)
| PDB | External Database | Details |
|---|---|---|
| A 79 | G 131378 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 58 | His 58 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 22 |
| Total formula weight | 762789.0 | |
| Non-Polymers* | Number of molecules | 111 |
| Total formula weight | 7371.4 | |
| All* | Total formula weight | 770160.4 |
