Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4KHP

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Functional Information from GO Data
ChainGOidnamespacecontents
B0003735molecular_functionstructural constituent of ribosome
B0005840cellular_componentribosome
B0006412biological_processtranslation
B0015935cellular_componentsmall ribosomal subunit
B0019843molecular_functionrRNA binding
B0022627cellular_componentcytosolic small ribosomal subunit
B1990904cellular_componentribonucleoprotein complex
C0003676molecular_functionnucleic acid binding
C0003723molecular_functionRNA binding
C0003735molecular_functionstructural constituent of ribosome
C0006412biological_processtranslation
D0003723molecular_functionRNA binding
D0003735molecular_functionstructural constituent of ribosome
D0005840cellular_componentribosome
D0006412biological_processtranslation
D0015935cellular_componentsmall ribosomal subunit
D0019843molecular_functionrRNA binding
D0042274biological_processribosomal small subunit biogenesis
D0046872molecular_functionmetal ion binding
D1990904cellular_componentribonucleoprotein complex
E0003723molecular_functionRNA binding
E0003735molecular_functionstructural constituent of ribosome
E0005737cellular_componentcytoplasm
E0005840cellular_componentribosome
E0006412biological_processtranslation
E0015935cellular_componentsmall ribosomal subunit
E0019843molecular_functionrRNA binding
E1990904cellular_componentribonucleoprotein complex
F0003735molecular_functionstructural constituent of ribosome
F0005737cellular_componentcytoplasm
F0005840cellular_componentribosome
F0006412biological_processtranslation
F0019843molecular_functionrRNA binding
F0070181molecular_functionsmall ribosomal subunit rRNA binding
F1990904cellular_componentribonucleoprotein complex
G0000028biological_processribosomal small subunit assembly
G0000049molecular_functiontRNA binding
G0003723molecular_functionRNA binding
G0003729molecular_functionmRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0005840cellular_componentribosome
G0006412biological_processtranslation
G0015935cellular_componentsmall ribosomal subunit
G0019843molecular_functionrRNA binding
G0022627cellular_componentcytosolic small ribosomal subunit
G1990904cellular_componentribonucleoprotein complex
H0003735molecular_functionstructural constituent of ribosome
H0005840cellular_componentribosome
H0006412biological_processtranslation
I0000049molecular_functiontRNA binding
I0003723molecular_functionRNA binding
I0003735molecular_functionstructural constituent of ribosome
I0005840cellular_componentribosome
I0006412biological_processtranslation
I0015935cellular_componentsmall ribosomal subunit
I0019843molecular_functionrRNA binding
I1990904cellular_componentribonucleoprotein complex
J0000049molecular_functiontRNA binding
J0003723molecular_functionRNA binding
J0003735molecular_functionstructural constituent of ribosome
J0005840cellular_componentribosome
J0006412biological_processtranslation
J0015935cellular_componentsmall ribosomal subunit
J0019843molecular_functionrRNA binding
J1990904cellular_componentribonucleoprotein complex
K0003735molecular_functionstructural constituent of ribosome
K0005840cellular_componentribosome
K0006412biological_processtranslation
K0019843molecular_functionrRNA binding
K0022627cellular_componentcytosolic small ribosomal subunit
K1990904cellular_componentribonucleoprotein complex
L0000049molecular_functiontRNA binding
L0003735molecular_functionstructural constituent of ribosome
L0005840cellular_componentribosome
L0006412biological_processtranslation
L0015935cellular_componentsmall ribosomal subunit
L0019843molecular_functionrRNA binding
L1990904cellular_componentribonucleoprotein complex
M0000049molecular_functiontRNA binding
M0003676molecular_functionnucleic acid binding
M0003723molecular_functionRNA binding
M0003735molecular_functionstructural constituent of ribosome
M0005829cellular_componentcytosol
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0015935cellular_componentsmall ribosomal subunit
M0019843molecular_functionrRNA binding
M1990904cellular_componentribonucleoprotein complex
N0003735molecular_functionstructural constituent of ribosome
N0005840cellular_componentribosome
N0006412biological_processtranslation
O0003735molecular_functionstructural constituent of ribosome
O0005737cellular_componentcytoplasm
O0005840cellular_componentribosome
O0006412biological_processtranslation
O0019843molecular_functionrRNA binding
O0022627cellular_componentcytosolic small ribosomal subunit
O1990904cellular_componentribonucleoprotein complex
P0003735molecular_functionstructural constituent of ribosome
P0005737cellular_componentcytoplasm
P0005840cellular_componentribosome
P0006412biological_processtranslation
P0015935cellular_componentsmall ribosomal subunit
P1990904cellular_componentribonucleoprotein complex
Q0003735molecular_functionstructural constituent of ribosome
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
R0003735molecular_functionstructural constituent of ribosome
R0005840cellular_componentribosome
R0006412biological_processtranslation
S0003723molecular_functionRNA binding
S0003735molecular_functionstructural constituent of ribosome
S0005840cellular_componentribosome
S0006412biological_processtranslation
S0015935cellular_componentsmall ribosomal subunit
T0003723molecular_functionRNA binding
T0003735molecular_functionstructural constituent of ribosome
T0005829cellular_componentcytosol
T0005840cellular_componentribosome
T0006412biological_processtranslation
T0015935cellular_componentsmall ribosomal subunit
T0019843molecular_functionrRNA binding
T0070181molecular_functionsmall ribosomal subunit rRNA binding
T1990904cellular_componentribonucleoprotein complex
U0005840cellular_componentribosome
Functional Information from PDB Data
site_id1
Number of Residues
Details
ChainResidue

site_id2
Number of Residues
Details
ChainResidue

site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PAR A 1601
ChainResidue
AG1388
AU1473
AU1389
AC1390
AA1391
AC1468
AG1469
AA1470
AA1471
AG1472

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PAR A 1602
ChainResidue
AG551
AG552
AC553
AG554
AG559
AG805
AG852
AC853

site_idAC3
Number of Residues13
DetailsBINDING SITE FOR RESIDUE PAR A 1603
ChainResidue
AA113
AA114
AC115
AG116
AC117
AG232
AC233
AG234
AU235
AC236
AC237
AG277
QLYS40

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PAR A 1604
ChainResidue
AG594
AA595
AC596
AC597
AA606
AC607
AC608
AG609
AU610
DGLU81
DLYS84

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PAR A 1605
ChainResidue
AU653
AG654
AU656
AG698
AA699
AA700
AC701

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PAR A 1606
ChainResidue
AG1044
AU1045
AU1048
AC1171
AG1172
ITYR114
JSER59

site_idAC7
Number of Residues17
DetailsBINDING SITE FOR RESIDUE PAR A 1607
ChainResidue
AG32
AC48
AC49
AA51
AA52
AG53
AG107
AU108
AG109
AA349
AC351
AA352
AU354
AU355
AA356
AG357
AC362

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PCY A 1608
ChainResidue
AG677
AA678
AA771
AU772
AC779
AC780
GGLY82
XC1
XU2

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1609
ChainResidue
AG922
AG923

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1610
ChainResidue
AG1206

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1611
ChainResidue
AG12
AU13
AG22
AG23
AC24

site_idBC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1612
ChainResidue
AG372

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1613
ChainResidue
AC733
AG734

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1614
ChainResidue
AA750
AC795

site_idBC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1615
ChainResidue
AA752

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1617
ChainResidue
AG561
AC562

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1619
ChainResidue
AA493
AA494
AG490

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1620
ChainResidue
AU544
AC546

site_idCC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1621
ChainResidue
AA17

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1622
ChainResidue
AG22

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1623
ChainResidue
AG579
AC580
AG581
AU582

site_idCC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1624
ChainResidue
AG836
AG847

site_idCC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1625
ChainResidue
AA915

site_idCC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1626
ChainResidue
AG1353
AG1354

site_idCC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1627
ChainResidue
AG1062

site_idCC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1629
ChainResidue
AG571
AG572

site_idCC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1630
ChainResidue
AC635

site_idDC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1631
ChainResidue
AA942
AU1181

site_idDC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1632
ChainResidue
AC958
AU1201
AG1202

site_idDC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1634
ChainResidue
AC1037
AG1179

site_idDC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1635
ChainResidue
AC1037
AG1179
AG1180

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1636
ChainResidue
AG295
AA296
AG542
AU544
AG550

site_idDC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1637
ChainResidue
AG320

site_idDC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1638
ChainResidue
AU555
AA556
AA557
AA558

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1639
ChainResidue
AA1093
AC1171

site_idDC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1640
ChainResidue
AA1050
AG1051
AG1077
AG1370

site_idEC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1641
ChainResidue
AU1078
AC1079
AG1091

site_idEC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1642
ChainResidue
AG282

site_idEC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1643
ChainResidue
AG1503

site_idEC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1644
ChainResidue
AU1488
AG1489
AU1490
AU1500
AG1501
AC1502

site_idEC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1645
ChainResidue
AA1477
AA1478
AG1486
AG1499

site_idEC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1646
ChainResidue
AA1477
AA1478
AG1482
AG1483

site_idEC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1647
ChainResidue
AA1478
AG1482
AG1483
AA1485
AG1486

site_idEC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1648
ChainResidue
AA202

site_idEC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1649
ChainResidue
AU177
AG178

site_idFC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1650
ChainResidue
AA110
AG111
AG285

site_idFC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1651
ChainResidue
AC348

site_idFC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1652
ChainResidue
AC368
AU371
AG372
AU383

site_idFC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1654
ChainResidue
AA766
AA778

site_idFC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1655
ChainResidue
AG1036
AG1041
AC1042
AG1180
AU1181

site_idFC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1656
ChainResidue
AC1285
AG1286
AG1287
UASP5

site_idFC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1657
ChainResidue
AA547
AC548
AU549
AG550
AG551

site_idFC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1659
ChainResidue
AG568
AG569
AU741

site_idFC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1660
ChainResidue
AA531
AG532

site_idGC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1662
ChainResidue
AG406

site_idGC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1663
ChainResidue
AC520

site_idGC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1664
ChainResidue
AC488
AG489

site_idGC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1665
ChainResidue
AC502
AG513
LPRO48
LASN49

site_idGC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1666
ChainResidue
AC169
AC170

site_idGC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1667
ChainResidue
AG62
AU63
AG99
AC100

site_idGC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1670
ChainResidue
AG1439
AG1440

site_idGC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1671
ChainResidue
AU1476

site_idGC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1672
ChainResidue
AU14
AA893

site_idHC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1673
ChainResidue
AU1073
AU1074
AG1077
AU1078

site_idHC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1674
ChainResidue
AA1220
AA1281
AU1283
AC1317

site_idHC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1675
ChainResidue
AA592
AA593

site_idHC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1676
ChainResidue
AG565
AG742

site_idHC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1677
ChainResidue
AA95

site_idHC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1678
ChainResidue
AC324
AA325

site_idHC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1679
ChainResidue
AA311

site_idHC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1680
ChainResidue
AU500
AA517

site_idHC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1681
ChainResidue
AC950
JASP58

site_idIC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1682
ChainResidue
AU899
AG900
AU1376

site_idIC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1683
ChainResidue
AC902
AG903
AG905
AU1373
AU1374

site_idIC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1685
ChainResidue
AG769
AG770

site_idIC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1687
ChainResidue
AG1393

site_idIC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1688
ChainResidue
AA1481

site_idIC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1689
ChainResidue
AU46
AG392

site_idIC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1690
ChainResidue
AG358

site_idIC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1691
ChainResidue
AG866

site_idIC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1692
ChainResidue
AG434

site_idJC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1696
ChainResidue
AA146

site_idJC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1697
ChainResidue
AC287
AU300
AG301

site_idJC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1698
ChainResidue
AG107

site_idJC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1699
ChainResidue
AC1086
BARG96

site_idJC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1700
ChainResidue
AG675
AU676
KASN26
KGLY52

site_idJC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1701
ChainResidue
AG1369

site_idJC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1702
ChainResidue
AU128
AU225
AG226

site_idJC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1703
ChainResidue
AC810
AU811
HARG12
HTHR24

site_idJC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1704
ChainResidue
AG141
AG142

site_idKC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1705
ChainResidue
AG634

site_idKC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1707
ChainResidue
AG693
AG694

site_idKC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 301
ChainResidue
AG422
DARG13
DTYR38
DPRO39
DPRO40
DGLY41

site_idKC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG E 201
ChainResidue
EGLU83

site_idKC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG K 201
ChainResidue
AG784
KLYS122

site_idKC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG S 101
ChainResidue
AA1209
STYR80
SARG81

Functional Information from PROSITE/UniProt
site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. DvLvtaFInkimrdGKKnlaarIFydA
ChainResidueDetails
GASP20-ALA46

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GiaILSTSkGVLtdreAR
ChainResidueDetails
HGLY108-ARG125

site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaS.GLqVksivDdTPvPHN
ChainResidueDetails
KILE95-ASN117

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
ChainResidueDetails
LLYS46-ARG53

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIiEsRPIS
ChainResidueDetails
QGLY54-SER66

site_idPS00057
Number of Residues24
DetailsRIBOSOMAL_S18 Ribosomal protein S18 signature. RDYrn.VevLkrFLSEt.GKIlprRR
ChainResidueDetails
RARG32-ARG55

site_idPS00063
Number of Residues16
DetailsALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LAKTIKraRIlGLlPF
ChainResidueDetails
RLEU66-PHE81

site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqhvpvyItenmVGhkLGEFapT
ChainResidueDetails
SASN53-THR77

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGksGQidAiklGiARAL
ChainResidueDetails
IGLY67-LEU85

site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. ArrsGAqvsGPIpLPT
ChainResidueDetails
JALA27-THR42

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. LseHLkvhKkDhhShrgLlmMvgqrrrLlrY
ChainResidueDetails
OLEU39-TYR69

site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvrcgrarsvyrfFGLCRiCLR
ChainResidueDetails
NARG23-ARG45

site_idPS00548
Number of Residues35
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewaaqGrVplHt..LranIDygfalarTtyGvlG
ChainResidueDetails
CALA163-GLY197

site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFgAlvVVGDrq.GrVGlGfgkap.EVpl.AV
ChainResidueDetails
EGLY23-VAL55

site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV
ChainResidueDetails
DLEU97-VAL121

site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ
ChainResidueDetails
MARG88-GLN101

site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkELLEAGVHFG
ChainResidueDetails
BVAL7-GLY18

site_idPS01048
Number of Residues10
DetailsRIBOSOMAL_S6 Ribosomal protein S6 signature. GlRRLAYpIA
ChainResidueDetails
FGLY44-ALA53

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:11866529
ChainResidueDetails
NCYS24
NCYS27
NCYS40
NCYS43

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon